FC917878

Overview
NameFC917878
Unique NameFC917878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13982 contig Ccv1_Contig13982:3..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917878 vs. ExPASy Swiss-Prot
Match: AEEP_BACSU (L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=ykfB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.798e-22
Identity = 75/194 (38.66%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  249 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDAN 821
            R E   + VPL  PF  A   +   E+V +RI   +G VGWGEAP    +T +   +     S    VLK  PA+   S+ G  A L    H     +  +AAVEMAL D  A+   +PL+++ GG  +T+ TD T+ + SP E A  A  Y KQGF TLK+KVGK ++  DI  ++ IR  V       LDAN
Sbjct:    5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI---ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDAN 193          
BLAST of FC917878 vs. ExPASy Swiss-Prot
Match: AEEP_CLOAB (L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum GN=CA_C0192 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 60/186 (32.26%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  267 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDAN 821
            L+VPL  PF  A   ++ V +V ++I    G VG+G A     VT +   T  ++ +    + +    M +     ++  L   +        +AAV++AL D   +    PL++L GG  N + TDITI + SP E +  +    K G+ TLK+KVGKN K DI+ +R IR A+  + +  +DAN
Sbjct:   11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDI--TESIEGAINNYIKRSIVGMDIEDFEAILIKL--DNCIVGNTSAKAAVDIALYDLYGQRYGAPLYKLLGGFRNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVNLRIDAN 192          
BLAST of FC917878 vs. ExPASy Swiss-Prot
Match: AEEP_THEMA (L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=TM_0006 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.259e-14
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  288 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 821
            PF I  S   +  NV + I L +G  G+GEA     V  E  +  +   +   E++          +F +   L     F S   ++AAV+ A +DA+++ +   +  L GG  + I TD T+ I +     + A K  ++GF  +K+KVG+NLKEDIE +  I  V   + +I+DAN
Sbjct:   19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFG---FPS---LKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDAN 190          
The following BLAST results are available for this feature:
BLAST of FC917878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AEEP_BACSU2.798e-2238.66L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=yk... [more]
AEEP_CLOAB6.675e-1632.26L-Ala-D/L-Glu epimerase OS=Clostridium acetobutyli... [more]
AEEP_THEMA1.259e-1430.90L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YN11RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YN11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917878 ID=FC917878; Name=FC917878; organism=Citrus clementina; type=EST; length=822bp
AAAACACTTGCAACCGCGACATTAACGATAGCAACAAGATTCTCTTCAAC
TTTAACAACAACTGCTTGTTTCACCGAGAATCCAATCAAACCCGACCGCC
AATGCTTTCAGTTGGATTCTATCTCCCTTTCAATAACATCAAACCCCAAA
AACCCATTTGCCAGATGGCGTCATCACCACCGGCTGCTGCTGCCCCGACC
AGCTTCAGCTTCAAGAACTTGACGCAAACGTTCACAGTGGATGTCCAGAG
AGCAGAGAACAGGCCCTTGAACGTGCCGCTGATTGCGCCTTTTACGATTG
CTACTTCGAGGCTTGATCAAGTGGAGAATGTGGCTATCAGAATCGAGCTT
AGTAATGGGTGTGTTGGGTGGGGCGAGGCCCCTGTTTTGCCTCACGTGAC
TGCTGAGGATCAGCAGACTGCGATGGTCAAAGCCAGTGAGGCTTGTGAGG
TTTTGAAAGAGAGCCCTGCCATGGCTTTGGGTTCTGTTTTTGGTGTGGTT
GCTGGCCTTCTCCCTGGTCATCAGTTTGCTTCTCAATTGAAGGTTAGGGC
AGCAGTCGAGATGGCACTGATTGATGCAGTTGCGAAAAGTGTCAGCATGC
CTTTGTGGAGACTCTTTGGTGGAGTTTCAAATACTATAACCACTGATATA
ACAATTCCAATTGTTTCCCCTGCTGAAGCAGCTGAACTGGCTTCAAAATA
TCGCAAACAAGGATTCACTACCCTGAAGCTTAAGGTGGGAAAGAATCTGA
AGGAAGACATAGAAGTCCTACGAGCAATACGTGCTGTCCACCCTGATTCT
TCATTCATCTTGGATGCCAATG
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