FC917881

Overview
NameFC917881
Unique NameFC917881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11837 contig Ccv1_Contig11837:55..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.054e-17
Identity = 31/110 (28.18%), Postives = 64/110 (58.18%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            ++D++EF  Y+ D E +L  +F+++D +++G I  +E+  +L   G+ I +++    ++ +DK+    I + EW D+ LL+P E  +  I  Y +   + D+GE   +P+
Sbjct:  110 QLDFEEFVHYLRDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPAE-NIPEIILYWKHSTIFDVGENLLVPD 218

HSP 2 Score: 34.6538 bits (78), Expect = 2.054e-17
Identity = 19/63 (30.16%), Postives = 29/63 (46.03%), Query Frame = 3 
Query:  285 ERDQRIRALFNFFDVNNSGYLDYAKIEAGLSSLNIPSEYKYARDLLNVCDSNQDGVLIIKSFV 473
            E + R++ LF   DVN  G +    +  GL  L +       R ++   D +QDG L  + FV
Sbjct:   55 EHETRLQILFQELDVNKDGGICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFEEFV 117

HSP 3 Score: 28.8758 bits (63), Expect = 2.054e-17
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGG AGA SRT TA
Sbjct:  232 RHLVAGGGAGAVSRTCTA 249
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.100e-16
Identity = 30/110 (27.27%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            ++D+ EF  Y+ D E +L  +F+++D +++G I  +E+  +L   G+ I +++    ++ +DK+    I + EW D+ LL+  E  +  I  Y +   + D+GE   +P+
Sbjct:  111 QLDFDEFVHYLRDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHSAE-NIPEIILYWKHSTIFDVGENLLVPD 219

HSP 2 Score: 35.039 bits (79), Expect = 2.100e-16
Identity = 19/63 (30.16%), Postives = 29/63 (46.03%), Query Frame = 3 
Query:  285 ERDQRIRALFNFFDVNNSGYLDYAKIEAGLSSLNIPSEYKYARDLLNVCDSNQDGVLIIKSFV 473
            E ++R++ LF   DVN  G +    +  GL  L +       R ++   D +QDG L    FV
Sbjct:   56 EHERRLQILFQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFV 118

HSP 3 Score: 28.8758 bits (63), Expect = 2.100e-16
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGG AGA SRT TA
Sbjct:  233 RHLVAGGGAGAVSRTCTA 250
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.990e-15
Identity = 31/110 (28.18%), Postives = 55/110 (50.00%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            RV Y +F  Y+   E  L  +F  ID   +G +   E+     + G+ +DD +  + V+++D+  +  +   E+ DF+LLYP    M  +  +     ++DIGE   +PE
Sbjct:  125 RVTYADFTNYVIAHEARLAEVFDQIDSNRDGEVDVSEIKSYCKEMGVNLDDHKALSIVKKMDQSGSSSVNLNEFQDFMLLYP-STDMREMVDFWRHNLIIDIGEDGQVPE 233

HSP 2 Score: 31.187 bits (69), Expect = 5.990e-15
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGGVAGA SRT TA
Sbjct:  247 RHLVAGGVAGAMSRTCTA 264

HSP 3 Score: 26.5646 bits (57), Expect = 5.990e-15
Identity = 10/32 (31.25%), Postives = 20/32 (62.50%), Query Frame = 3 
Query:  285 ERDQRIRALFNFFDVNNSGYLDYAKIEAGLSS 380
            E++++IR +++  D +N G +D   +   LSS
Sbjct:   70 EKEKKIREMYDRLDADNDGSIDIRDLTQALSS 101
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.160e-14
Identity = 31/114 (27.19%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPEGISK 790
            RVD+  F  Y+ + E +L  +F  +D  H+G +   E+ +     G+ +DD +    V ++D+  +  +  +E+ +F++LYP  + +++I  +     ++DIGE + IPE  S+
Sbjct:  128 RVDFYSFSSYVLENEQKLAEMFADMDRNHDGLVDVVEMKNYCKDIGVPLDDHKAQHIVNKMDQTGSASVDLKEFQEFMMLYP-SSDLKDIVDFWRHNLIIDIGEDSQIPEDFSQ 240

HSP 2 Score: 30.0314 bits (66), Expect = 2.160e-14
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGG AGA SRT TA
Sbjct:  250 RHLVAGGAAGAVSRTCTA 267

HSP 3 Score: 26.9498 bits (58), Expect = 2.160e-14
Identity = 10/35 (28.57%), Postives = 21/35 (60.00%), Query Frame = 3 
Query:  270 GESKEERDQRIRALFNFFDVNNSGYLDYAKIEAGL 374
            G   EE++++IR +++  D++N G +D   +   L
Sbjct:   68 GGMSEEKERQIRDIYDRLDIDNDGTIDIRDLTLAL 102
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.021e-13
Identity = 30/109 (27.52%), Postives = 56/109 (51.38%), Query Frame = 2 
Query:  452 VDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            +D+ EF RY+++ E ++   F ++D   +G I   E+ ++L   GI I  E     ++ +D D    + + EW D  L  P +  ++ I  Y +   ++DIG+   IP+
Sbjct:   75 LDFGEFIRYLEEHEKKMKIAFTSLDKNKDGKIESAEIMNSLKTLGINISLEHAEKILKSMDADGTLTVDWNEWRDHFLFNPAD-NIQQIIRYWKHSTVLDIGDSLTIPD 182

HSP 2 Score: 31.5722 bits (70), Expect = 1.021e-13
Identity = 16/59 (27.12%), Postives = 29/59 (49.15%), Query Frame = 3 
Query:  297 RIRALFNFFDVNNSGYLDYAKIEAGLSSLNIPSEYKYARDLLNVCDSNQDGVLIIKSFV 473
            R   LF+  DVN  G +D  +++ GL ++ +         ++   D+N+DG L    F+
Sbjct:   23 RYAELFHKLDVNKDGKVDIVELQEGLKAMGMAVGKGAEEKIVAAGDTNKDGHLDFGEFI 81

HSP 3 Score: 28.4906 bits (62), Expect = 1.021e-13
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            + L+AGG+AGA SRT TA
Sbjct:  196 KQLLAGGMAGAVSRTGTA 213
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.459e-13
Identity = 29/110 (26.36%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            ++D++EF +Y+ D E ++   F+++D  ++G I P E+  +L   G+ I +++    ++ +D D    + + EW D+ L  P    +E I  + +    +DIG+   IP+
Sbjct:   74 KLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEPSEIVQSLQMLGLHISEKQAELILQSIDSDGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHSTGIDIGDSLTIPD 182

HSP 2 Score: 31.187 bits (69), Expect = 1.459e-13
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R L+AGGVAGA SRT+TA
Sbjct:  196 RQLLAGGVAGAVSRTSTA 213
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.208e-13
Identity = 29/109 (26.61%), Postives = 57/109 (52.29%), Query Frame = 2 
Query:  452 VDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            +D+ EF RY+++ E ++   F ++D   +G I   E+ ++L   GI+I  +     ++ +D D    + + EW D  L  P +  ++ I  Y +   ++DIG+   IP+
Sbjct:   75 LDFGEFIRYLEEHEKKMKIAFTSLDKNKDGKIESAEIMNSLKVLGIKISLDHADKILKSMDSDGTLTVDWNEWRDHFLFNPAD-NIQQIIRYWKHSTVLDIGDSLTIPD 182

HSP 2 Score: 31.9574 bits (71), Expect = 2.208e-13
Identity = 16/63 (25.40%), Postives = 30/63 (47.62%), Query Frame = 3 
Query:  285 ERDQRIRALFNFFDVNNSGYLDYAKIEAGLSSLNIPSEYKYARDLLNVCDSNQDGVLIIKSFV 473
            +   R   LF+  DVN  G +D  +++ GL ++ +         ++   D+N+DG L    F+
Sbjct:   19 DSQSRYEELFHKLDVNKDGKVDILELQEGLKAMGMEVGKGAEEKIVAAGDTNKDGHLDFGEFI 81

HSP 3 Score: 28.1054 bits (61), Expect = 2.208e-13
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            + L+AGG+AGA SRT TA
Sbjct:  196 KQLMAGGMAGAVSRTGTA 213
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 65.4698 bits (158), Expect = 2.453e-13
Identity = 31/110 (28.18%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            RV Y +F  Y+   E  L  +F  ID+  +G +   E+     + G+ +DD++  + V+++D+  +  +   E+ DF+LLYP    M ++  +     ++DIGE   +PE
Sbjct:  124 RVTYADFTNYVIAHEARLAEVFDKIDLNSDGEVDMAEIKSYCKEMGVNLDDQKAMSIVKKMDQSGSSSVNLNEFQDFMLLYP-STDMRDMVDFWRHNLIIDIGEDGQVPE 232

HSP 2 Score: 31.187 bits (69), Expect = 2.453e-13
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGGVAGA SRT TA
Sbjct:  246 RHLVAGGVAGAMSRTCTA 263
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.462e-13
Identity = 31/110 (28.18%), Postives = 65/110 (59.09%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            ++D++EF  Y+ D E +L  +F+++D +++G I  +E+  +L   G++I +++    ++ +DK+    I + EW D+ LL+P E  +  I  Y +   + D+GE   +P+
Sbjct:   66 QLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPD 174

HSP 2 Score: 28.8758 bits (63), Expect = 2.462e-13
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGG AGA SRT TA
Sbjct:  188 RHLVAGGGAGAVSRTCTA 205
[Close]
BLAST of FC917881 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.462e-13
Identity = 31/110 (28.18%), Postives = 65/110 (59.09%), Query Frame = 2 
Query:  449 RVDYQEFRRYMDDKELELYRIFQAIDVEHNGGILPEELYHALVKAGIEIDDEELATFVERVDKDNNGVITFEEWGDFLLLYPHEATMENIYHYLERVCLVDIGEQAAIPE 778
            ++D++EF  Y+ D E +L  +F+++D +++G I  +E+  +L   G++I +++    ++ +DK+    I + EW D+ LL+P E  +  I  Y +   + D+GE   +P+
Sbjct:   66 QLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKILKSMDKNGTMTIDWNEWRDYHLLHPVE-NIPEIILYWKHSTIFDVGENLTVPD 174

HSP 2 Score: 28.8758 bits (63), Expect = 2.462e-13
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  807 RNLIAGGVAGATSRTATA 860
            R+L+AGG AGA SRT TA
Sbjct:  188 RHLVAGGGAGAVSRTCTA 205
The following BLAST results are available for this feature:
BLAST of FC917881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SCMC2_XENTR2.054e-1728.18Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA2.100e-1627.27Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEBR5.990e-1528.18Probable calcium-binding mitochondrial carrier CBG... [more]
CMC2_CAEEL2.160e-1427.19Putative calcium-binding mitochondrial carrier F55... [more]
SCMC1_XENTR1.021e-1327.52Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE1.459e-1326.36Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA2.208e-1326.61Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEEL2.453e-1328.18Probable calcium-binding mitochondrial carrier F17... [more]
SCMC2_RAT2.462e-1328.18Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE2.462e-1328.18Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917881 ID=FC917881; Name=FC917881; organism=Citrus clementina; type=EST; length=860bp
ACAAATTAGAAAAAAAAATTACATTTTTATCTTTCGATGGGCACGTTTTT
GGAAGCAGATTTGGCCGTTGATTCCATTCCATCACGGCCAAAATGTCCTC
TCCGATGACGACTTAGACTCAGTATTTGTTCAAATCTTTGACTCAAAACA
CGCGCGCGGGGTTCCTCTGTTTTTATGGTTTATTAATGGCGACACAGCAA
AGCAATGGGAGCAATCCGGTGAAAAAGGCGGGGACTAGTGTAACCATGGA
GCACGTGTTATTGGCTTTAGGTGAGAGTAAAGAAGAAAGAGATCAGAGAA
TCCGAGCTCTTTTTAATTTTTTTGATGTCAATAATTCTGGGTATTTAGAT
TATGCAAAGATAGAGGCAGGGCTCTCTTCGCTGAATATACCCTCCGAGTA
CAAGTATGCAAGGGATTTGTTGAATGTTTGTGATTCTAATCAAGATGGCG
TGTTGATTATCAAGAGTTTCGTCGCTATATGGATGATAAGGAGCTCGAGC
TTTACAGGATTTTTCAAGCCATCGATGTTGAACACAATGGTGGCATTTTG
CCTGAAGAGCTTTATCATGCGCTTGTCAAGGCAGGAATTGAAATTGATGA
TGAGGAGCTCGCTACTTTTGTTGAGCGTGTGGATAAGGATAATAATGGAG
TTATAACATTTGAAGAGTGGGGGGACTTTCTTCTGTTGTATCCTCATGAG
GCAACTATGGAGAACATTTATCATTACTTAGAAAGGGTGTGTCTTGTTGA
TATTGGGGAACAGGCTGCCATACCTGAGGGTATCAGTAAGCATGTTGCAT
GCAAATCGAAATTTGATTGCTGGAGGAGTTGCTGGAGCAACTTCTCGGAC
CGCCACTGCT
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