FC917885

Overview
NameFC917885
Unique NameFC917885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10704 contig Ccv1_Contig10704:7..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.215e-67
Identity = 137/221 (61.99%), Postives = 155/221 (70.14%), Query Frame = 2
Query:  128 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYD-ADFGNSIQQQPLKLKRSVSAGSSVPVTTGLYMXXXXXXXXXXXXXXXXXXXXNYNIYKPVARSGGINVDVNVVPEP-ETTSSSNDPPTSLSLSLPGVD 784
            DRIKGPWSPEEDE L++LV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+ EEDE I RAHA+FGNKWATIARLLNGRTDNA+KNHWNSTLKRK             C GYD   +  S   +P  +KRSVSAGS  PV TGLYM                    +  ++KPV R G +     V+P P ET+SSS+DPPTSLSLSLPG D
Sbjct:    3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK-------------CGGYDHRGYDGSEDHRP--VKRSVSAGSP-PVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAV-----VLPLPIETSSSSDDPPTSLSLSLPGAD 202          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.754e-33
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.291e-33
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.291e-33
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC---SSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTT 577
            +KGPW  EED  L +LV K GP+ WS I+  IPGR GK CR RW N LSP+V    +TPEED++II AHA  GNKW  I+++L+GR  NAIKNHWNSTL +K    S  L +     + +  DA+ G+S    P+ L +S S+ ++   TT
Sbjct:  276 VKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLSPISLYQSSSSTTTTTTTT 426          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.137e-32
Identity = 69/154 (44.81%), Postives = 98/154 (63.64%), Query Frame = 2
Query:  128 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNG-------YDADFGNSIQQQPLKLKRSVSAGSSVP 568
            D +KGPW+ EEDE + +LV+K+G ++W+LI+K + GR GK CR RW N L+P+V+  ++T EED +I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      E G FL            D+ +  +  Q  + L   V   +++P
Sbjct:   80 DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-----VETGGFLTVKASGQQEEREDSGYQAAEDQNHVLLSEPVERSANIP 228          
BLAST of FC917885 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.137e-32
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 2
Query:  134 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 439
            IKGPW+ EED+ + +LVQK+GP+ WSLI+K + GR GK CR RW N L+P+V+  ++T  ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
The following BLAST results are available for this feature:
BLAST of FC917885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB44_ARATH9.215e-6761.99Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_MOUSE1.754e-3360.78Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN1.754e-3360.78Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK1.754e-3360.78Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN1.754e-3360.78Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE2.291e-3360.78Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN2.291e-3360.78Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBQ_DICDI2.992e-3348.34Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBB_XENLA1.137e-3244.81Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBA_CHICK1.137e-3259.80Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA5AG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917885 ID=FC917885; Name=FC917885; organism=Citrus clementina; type=EST; length=877bp
TAAAAAAGAAAAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTC
TTGCATGATCAACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCA
TTAATGGCGTTTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAG
CCCCGAAGAAGACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAA
GAAATTGGTCTCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCT
TGCCGGCTACGGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGC
GTTCACGCCCGAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTG
GCAACAAGTGGGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAAC
GCGATTAAGAATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGAT
GTTGACAGAGAACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATT
TTGGGAATAGTATTCAGCAACAGCCGTTAAAATTGAAAAGATCGGTGAGT
GCGGGATCGAGTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAG
TCCATCGGGATCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGA
ATTACAATATATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGAC
GTGAATGTGGTGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCC
TACTTCATTGAGTCTGTCCCTTCCTGGTGTGGATTCCTCCTCAGAAGTTT
CAAACAAAGTGAGTGAGTCAACTCAGGCAGTGAACGCAAAAGCTTCGGTG
CCGGCTCCAGTAAGTAGTGACAGTGGG
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