FC917887

Overview
NameFC917887
Unique NameFC917887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12011 contig Ccv1_Contig12011:191..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.268e-67
Identity = 123/204 (60.29%), Postives = 158/204 (77.45%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 755
            ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++            +Q            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LSKDK S
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 226          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 65/202 (32.18%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            ++L  R   VH+ +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++           K              +   A+  R++IN  +    +I  G+D + F   +A LW+LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S+IPR   KDK
Sbjct:   67 YRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDK 268          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26
Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 743
            ++L  R   +H+  GGG+ AD+ LW+ ++VS GV+  ATV+W++FE      L++   + +L + ++           K             +V   A+  R++IN    +  DI  G+D + F  V+A LW+LS +GS  +F TL YI T+L  T+P LY ++E +VD +     + I + Y   D  V+S++   + K
Sbjct:   46 YRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPK 245          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.599e-26
Identity = 67/207 (32.37%), Postives = 105/207 (50.72%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE----NVISRIPR-TLSKDK 749
            ++L  R   VH+ +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      +  +  +           K              +    +  R++IN  L +  +I  GKD + F  V+A LW+LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I + Y V+DE     VIS+IPR  L+K K
Sbjct:   50 YRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 62/202 (30.69%), Postives = 105/202 (51.98%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            ++L  R   VH+ +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++           K              +   A+  R++IN       +I  G+D + F   +A LW+LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S+IP    K+K
Sbjct:   71 YRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNK 272          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25
Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKV 752
            ++L  R   VH+ +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS+   +L+  +  +           K                   ++ R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD       K + +HY V DE V+S++P    K K+
Sbjct:   50 YRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAKL 252          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 638
            KL NR  T+H+ +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLLLL+ ++           +             M   A+   R+ +N LL ++HDI + +D  L+ +V   L+LLS IGS   F TL +   L+ +TVPA Y R+E
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.146e-24
Identity = 62/202 (30.69%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            +++  R   VH+ +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + +L +  +           K                  A+S R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+S+IP    K K
Sbjct:   50 YRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAK 251          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23
Identity = 54/186 (29.03%), Postives = 97/186 (52.15%), Query Frame = 3
Query:  168 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 725
            +VHQ +  G  AD+++WK RR  F ++   T+ W +FE+ G  F     +  LL +V++           +              V   A + RV IN +L +A +I VG++ +  F+V   LW +S +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +I
Sbjct:    4 SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  168 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749
            +VHQ +G G  AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ +            +               N AA   RV INY+L +A DIT+ ++     QV   LW +S +G+  +  TL YIG LLS++ P +Y +++  +D       K +         N+  + P  ++K+K
Sbjct:   12 SVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFV--------RNISRKFPLPINKEK 197          
The following BLAST results are available for this feature:
BLAST of FC917887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLP_ARATH9.268e-6760.29Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLB_ARATH3.806e-2832.18Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.225e-2630.50Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.599e-2632.37Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH2.728e-2630.69Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.037e-2530.54Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH3.939e-2534.76Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLE_ARATH1.146e-2430.69Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH2.161e-2329.03Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH3.687e-2330.93Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22DF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917887 ID=FC917887; Name=FC917887; organism=Citrus clementina; type=EST; length=881bp
AATGTCGTTTACATTGGCCGCTAAATTTCCGGCGTTGATTGATGGATAAT
TCGGCAGATTCGTGCGATATAGTCGATCGAGATGGAGACGCAGCTGCCAC
CAGTTCCTCATCGACATCCGCCCCCGCCGCCGGCGCCGGAGGATTTAAGC
TTTTAAATCGGCACGGAACAGTTCACCAGTTCATGGGCGGCGGTAGAACT
GCTGATGTGCTGTTATGGAAACGACGCCGTGTTTCTTTTGGTGTGATTGT
GGTTGCTACCGTTGCATGGCTGATATTTGAGCGGTCTGGGTTACCTTTCT
TGTCTGTTTGTTCGGATGTTTTGCTGTTGCTGATCGTTTTGATGTTCTTT
CGTGCCAATTTTGCTGCTTTTAGAAATAAACAACTAGAGTCATTACCTGA
GTTGGAGGTATCGGAGGAAATGGTTAATAATGCTGCAGCATCATTTCGTG
TTAAAATAAACTATCTGCTCCTTATGGCTCACGACATCACTGTTGGCAAG
GATTTTAGACTCTTTTTCCAGGTGGTGGCCTATCTTTGGCTCCTGTCTGC
CATTGGTAGCTACTTCTCATTCTTCACTCTAGCCTATATCGGAACTCTCT
TATCCATTACAGTTCCTGCATTGTACAGCAGATTTGAAGCACGTGTGGAT
AGATATTGCGGGATGATCCATAAGAGTATATCTCAGCACTACAAAGTAGT
GGACGAAAATGTTATTAGTCGAATTCCAAGGACTTTATCCAAGGACAAAG
TTTCATAACTTTGATATTTTTCTAACAGATGACAGTTTATTAAAAAGGAA
AAACAGAACCATAACGGTATGAGTGAATGTCGCAGAATTTTGGAGCATCG
AATTGATGCAGAGTTGTCAAAGTTTCTCTTC
back to top