FC917887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 9.268e-67 Identity = 123/204 (60.29%), Postives = 158/204 (77.45%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 755 ++LL R TVHQFMGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++ +Q MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV LWLLSAIGSY S TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+ +LSKDK S Sbjct: 23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 226
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28 Identity = 65/202 (32.18%), Postives = 105/202 (51.98%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 ++L R VH+ +GGG+ AD+ +WK +++S GV ATVAW++FE L++ V+++ + ++ K + A+ R++IN + +I G+D + F +A LW+LS +G +SF TLAYI +L TVP Y ++E +VD Y + + Y V+D V S+IPR KDK Sbjct: 67 YRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDK 268
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.225e-26 Identity = 61/200 (30.50%), Postives = 104/200 (52.00%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 743 ++L R +H+ GGG+ AD+ LW+ ++VS GV+ ATV+W++FE L++ + +L + ++ K +V A+ R++IN + DI G+D + F V+A LW+LS +GS +F TL YI T+L T+P LY ++E +VD + + I + Y D V+S++ + K Sbjct: 46 YRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPK 245
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.599e-26 Identity = 67/207 (32.37%), Postives = 105/207 (50.72%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE----NVISRIPR-TLSKDK 749 ++L R VH+ +GGG+ AD+ LW+ ++VS GV+ T +W++FE L+ + + + K + + R++IN L + +I GKD + F V+A LW+LS IGS ++F TL Y T+L T+P LY ++E +VD Y + I + Y V+DE VIS+IPR L+K K Sbjct: 50 YRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26 Identity = 62/202 (30.69%), Postives = 105/202 (51.98%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 ++L R VH+ +GGG+ AD+ +WK +++S GV+ AT AW++FE L++ V+++++ ++ K + A+ R++IN +I G+D + F +A LW+LS +G F+F TLAYI +L TVP Y ++E +VD + + Y V+DE V+S+IP K+K Sbjct: 71 YRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNK 272
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25 Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKV 752 ++L R VH+ +GGG ADV LW+ +++S V+ VAT W++FE FLS+ +L+ + + K ++ R ++N ++ I +G+D + F VV LW++S +G++F+F TL YI ++ TVP LY + E +VD K + +HY V DE V+S++P K K+ Sbjct: 50 YRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAKL 252
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.939e-25 Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 3 Query: 147 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 638 KL NR T+H+ +GGG ADV+LW+++ VS G++ V +W++FE ++ S VLLLL+ ++ + M A+ R+ +N LL ++HDI + +D L+ +V L+LLS IGS F TL + L+ +TVPA Y R+E Sbjct: 7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.146e-24 Identity = 62/202 (30.69%), Postives = 102/202 (50.50%), Query Frame = 3 Query: 144 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 +++ R VH+ +GGG+ ADV LW+ +++S V+ VAT W++FE LS+ + +L + + K A+S R ++N ++ I +G+D + F VV LW++S +G++F+F TL YI ++ TVP LY + E +VD K + + Y V DE V+S+IP K K Sbjct: 50 YRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAK 251
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.161e-23 Identity = 54/186 (29.03%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 168 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 725 +VHQ + G AD+++WK RR F ++ T+ W +FE+ G F + LL +V++ + V A + RV IN +L +A +I VG++ + F+V LW +S +G++ +F T+ Y+G +LS+ +P LY R++ +D + H+ I Y+ +DE ++ +I Sbjct: 4 SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189
BLAST of FC917887 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23 Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 3 Query: 168 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 749 +VHQ +G G AD+LLW+ R + +++ +T W +FER+G LS S+VLLLL+ + + N AA RV INY+L +A DIT+ ++ QV LW +S +G+ + TL YIG LLS++ P +Y +++ +D K + N+ + P ++K+K Sbjct: 12 SVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFV--------RNISRKFPLPINKEK 197 The following BLAST results are available for this feature:
BLAST of FC917887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917887 ID=FC917887; Name=FC917887; organism=Citrus clementina; type=EST; length=881bpback to top |