FC917908

Overview
NameFC917908
Unique NameFC917908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length817
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2715 contig Ccv1_Contig2715:4..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917908 vs. ExPASy Swiss-Prot
Match: TBC13_HUMAN (TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  357 SDLEYELSQKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYXXXXXXXXXRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFF 791
            +D +  L +  I LEKL+ ++ +G+P  GGLR   WK+LL YLP  R  W   L + R+ Y         +P  I +    VS                R++++ EDHPL+    S W+ YF+  E+  QID+D++R  PD+ FF
Sbjct:   10 ADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRELYAQFLREMIIQPG-IAKANMGVS----------------REDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFF 137          
BLAST of FC917908 vs. ExPASy Swiss-Prot
Match: TBC13_MOUSE (TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  357 SDLEYELSQKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYXXXXXXXXXRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFF 791
            +D +  L +  I LEKL+ ++ +G+P  GGLR   WK+LL YLP  R  W   L + R  Y         +P  I +    V                 R++++ EDHPL+    S W+ YF+  E+  QID+D++R  PD+ FF
Sbjct:   10 ADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQFLREMIIQPG-IAKANMGVF----------------REDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFF 137          
BLAST of FC917908 vs. ExPASy Swiss-Prot
Match: YLOH_SCHPO (TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe GN=SPAC1952.17c PE=2 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 3
Query:  378 SQKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYXXXXXXXXXRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSXDAAFSR 815
            S++ I+L  L  +   G+PD   LRA AW L+L +LP+ R  W+  L ++R+ Y          P     + +E                         DHPL++   S W +YF   +I EQID+D++RT PD+ FF   +  ++
Sbjct:   16 SEEPISLPGLCSLCIQGIPDEYSLRAKAWMLMLEFLPTDRSNWQSVLEKHRKTYTSFVQELLIDPWRKLTLHEESG--------------------ENSDHPLNTSDDSKWKEYFDDNQILEQIDKDIRRTLPDLSFFQGKSEINK 141          
The following BLAST results are available for this feature:
BLAST of FC917908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TBC13_HUMAN8.607e-1633.79TBC1 domain family member 13 OS=Homo sapiens GN=TB... [more]
TBC13_MOUSE1.623e-1433.10TBC1 domain family member 13 OS=Mus musculus GN=Tb... [more]
YLOH_SCHPO5.222e-1329.45TBC domain-containing protein C1952.17c OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917908 ID=FC917908; Name=FC917908; organism=Citrus clementina; type=EST; length=817bp
CAAAGTTCATCAACCCATCTCGCCTGAGTCACCGCCATTCACTCAGTGCC
ACAATGTTCGAAGGCAAGCTCAATCTCCCCGAAAAGGCTTGCCGAGCGTT
TCCCGATCGGCTCGGGAGCTTGGCGGCCGGCTTTGACATTAAAGACAACA
GAAGTGGAAAGTCCGATTCCGCATTCGAGTCCGGTGAAGAGCTCGAGATT
TTGAAACCGAACGGGCCCGGATCGGCTCCAGAGAGCGAGGATGATTATGT
GGAGATGATGGAAGAGCATTTCGAATCAAGGGTCCGGCGAAATCCCAAAA
AATACGGGTCGCGTTTGGTCTCCGTCAAAGAAGTTATCGCTGCGGATGAT
AAAAGGTCCGATCTTGAATACGAGCTATCACAGAAGGAGATAAACTTGGA
AAAGTTACAAAGGATTGCTGATACAGGGCTTCCTGATGGAGGAGGCTTGC
GTGCTACTGCTTGGAAGCTGCTCTTAGGTTATTTGCCTTCTTGTCGTGAC
TTGTGGGAAAAGGAGCTGACGGAGAATCGGCAGAAATACTTAAAGCTGAA
AGAGGAACTTCTCTTGCGTCCTTCAGAAATCACAAGGATTAAAGATGAAG
TATCGAATTACAATGACCAGAATGCTGACAATGATGTTGATGGACCACTT
AGGAGACAAGAAATCTCTCAAGAAGATCACCCTTTGAGCAGTGGTAAGGC
CAGTGTTTGGCATCAATATTTCCAGCATATAGAGATAGCAGAACAAATTG
ATCGTGATCTACAACGCACACATCCGGACATGAAATTCTTCTCANGAGAT
GCAGCATTCAGTAGAAA
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