FC917911

Overview
NameFC917911
Unique NameFC917911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917911_ssr27 microsatellite FC917911_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11373 contig Ccv1_Contig11373:55..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX1_ARATH (Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 3.150e-93
Identity = 169/201 (84.08%), Postives = 188/201 (93.53%), Query Frame = 1
Query:  241 SVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIN 843
            S+V KL  ++TSDH SVV++N+FVALLCA IV+GHLLEE+RWMNESITALLIG+  GV ILL + GKSSHL VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIMLFGA+GT++SCTIISLGV QFFKKLDIGT D+GDYLAIGAIFAATDSVCTLQVLNQD+TPLLYSLVFGEGVVNDATSVV+FNAIQSFDLTH+N
Sbjct:    4 SLVSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGVTILLISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIISCTIISLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVVFNAIQSFDLTHLN 204          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX2_ARATH (Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.374e-93
Identity = 170/201 (84.58%), Postives = 187/201 (93.03%), Query Frame = 1
Query:  241 SVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIN 843
            S+  K+  V+TSDH SVVS+N+FVALLCA IVIGHLLEE+RWMNESITALLIG+  GV+ILL + GK+SHL VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIM FGAIGT+VSCTIISLG IQFFKKLDIGT D+GD+LAIGAIFAATDSVCTLQVLNQD+TPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTH+N
Sbjct:    6 SLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCTIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHLN 206          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX3_ARATH (Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 2.047e-84
Identity = 155/201 (77.11%), Postives = 178/201 (88.56%), Query Frame = 1
Query:  241 SVVRKLQMVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIN 843
            +++ K + +  SDH SVVS+N+FVALLCA IV+GHLLEE+RWMNESITAL+IG C G++ILL +GGKSS + VFSEDLFFIY+LPPIIFNAGFQVKKKQFFRNF+TIMLFGAIGTL+S  IIS G    F+K++IG L I DYLAIGAIF+ATDSVCTLQVLNQD+TPLLYSLVFGEGVVNDATSVVLFNAIQ FDLT+IN
Sbjct:    7 TMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGSCTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQRFDLTNIN 207          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX4_ARATH (Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 6.615e-67
Identity = 121/182 (66.48%), Postives = 149/182 (81.87%), Query Frame = 1
Query:  274 SDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPLLYSLVFGEGVVNDATSVVLFNAIQ 819
            ++H  V+ I++F+A+LC  +VIGHLLEE+RW+NESITA+L+G  +G +ILL + GKSSH+ VF E+LFFIY+LPPIIFNAGFQVKKK+FF NF+TIM FG IG  +S  IIS G    F KL    L   DYLAIG IF++TD+VCTLQ+L+QD+TPLLYSLVFGEGVVNDATSVVLFNA+Q
Sbjct:   15 AEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVILLISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVIISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVNDATSVVLFNAVQ 196          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX1_YEAST (Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae GN=NHX1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.963e-22
Identity = 58/190 (30.53%), Postives = 109/190 (57.37%), Query Frame = 1
Query:  271 TSDHNSVVSINIFVALLCASIVIGHLLEESRW--MNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDIGTLDI--GDYLAIGAIFAATDSVCTLQVLNQDDT-PLLYSLVFGEGVVNDATSVVLFNAIQSF 825
            T +  S  ++ I + LL +++   + L + R   ++E++ ++  G+  G+II ++ G        F+   FF  +LPPII N+G+++ +  FF N ++I++F   GT +S  +I + ++  +  L + ++DI   D +++GA  +ATD V  L + N     P LY+++FGE ++NDA S+V+F   Q F
Sbjct:   55 TEEMFSSWALFIMLLLLISALWSSYYLTQKRIRAVHETVLSIFYGMVIGLIIRMSPGHYIQDTVTFNSSYFFNVLLPPIILNSGYELNQVNFFNNMLSILIFAIPGTFISAVVIGI-ILYIWTFLGLESIDISFADAMSVGATLSATDPVTILSIFNAYKVDPKLYTIIFGESLLNDAISIVMFETCQKF 243          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHE1_DICDI (Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.465e-22
Identity = 58/190 (30.53%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  262 MVNTSDHNSVVSINIFVALLCASIVIGHLLEESRWMNESITALLIGVCAGVIILLTTGGKSSHLFVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGV-IQFFKKLDIGTLDIGDYLAIGAIFAATDSVCTL---QVLNQDDTPLLYSLVFGEGVVNDATSVVLFNAIQ 819
            + N  + N+++ I + +      IV   +  +  ++ ES+  +  G+  G++         +H+  F  + FF+++LP IIF  G+ + K  FF N   I++F   GT+++  ++  G+ I  +  + I  L + D  A G+I ++TD VCTL   Q LN D  P+LY LV GE ++NDATS++L++ ++
Sbjct:  112 LANQREANTIIFIIMLILTGSVLIVYFIISLDIPFVPESVAVVTYGIILGIVFRFFYSDIVNHVVSFEPENFFLFILPTIIFETGYSLHKTDFFNNIGPILMFAVFGTIITFLVVGFGIYIVGYFGVSI-ALSLKDSFAFGSIISSTDPVCTLAIFQALNVD--PMLYILVLGESILNDATSMMLYSVVE 298          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: SL9A8_RAT (Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 63/202 (31.19%), Postives = 110/202 (54.46%), Query Frame = 1
Query:  259 QMVNTSDHNSVVSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHLF---VFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLD-IGTLDIGDYLAIGAIFAATDSVCTLQVLNQ-DDTPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIN 843
            +     + +S ++I   + +L   I++ HLL   R  ++ ES+  + +G+  G +I +    K ++     +F  ++FF+ +LPPIIF +G+ + K  FF+N  +I LF   GT +S  ++  G I F  + D I  L++ D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N  +     H++
Sbjct:   43 EQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG-GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMS 243          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: SL9A8_MOUSE (Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 63/202 (31.19%), Postives = 110/202 (54.46%), Query Frame = 1
Query:  259 QMVNTSDHNSVVSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHLF---VFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLD-IGTLDIGDYLAIGAIFAATDSVCTLQVLNQ-DDTPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHIN 843
            +     + +S ++I   + +L   I++ HLL   R  ++ ES+  + +G+  G +I +    K ++     +F  ++FF+ +LPPIIF +G+ + K  FF+N  +I LF   GT +S  ++  G I F  + D I  L++ D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N  +     H++
Sbjct:   44 EQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG-GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMS 244          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 63/180 (35.00%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  292 VSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHL-FVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLDI-GTLDIGDYLAIGAIFAATDSVCTLQVLNQDDTPL-LYSLVFGEGVVNDATSVVLFNAI 816
            V I + + +L  S V+GH+L   R  ++ E+  +LLIG+  G++  ++    S    F F E+ FF+++LPPIIF +GF ++ K FF NF  I+ F  IGT V+ ++++ G++     + +   L   + L  GA+ +ATD V  L +     T + LY+LVFGE V+NDA ++ L+  +
Sbjct:   21 VGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLLIGLIVGILANISDTETSIRTWFNFHEEFFFLFLLPPIIFQSGFSLQPKPFFSNFGAIVTFAIIGTFVA-SVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQDVGTDVNLYALVFGESVLNDAMAISLYRTM 199          
BLAST of FC917911 vs. ExPASy Swiss-Prot
Match: SL9A8_MACFA (Sodium/hydrogen exchanger 8 OS=Macaca fascicularis GN=SLC9A8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 62/194 (31.96%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  259 QMVNTSDHNSVVSINIFVALLCASIVIGHLLEESR--WMNESITALLIGVCAGVIILLTTGGKSSHLF---VFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAIGTLVSCTIISLGVIQFFKKLD-IGTLDIGDYLAIGAIFAATDSVCTLQVLNQ-DDTPLLYSLVFGEGVVNDATSVVLFNAIQ 819
            +     + +S ++I   + +L   I++ HLL   R  ++ ES+  + +G+  G +I +    K ++     +F  ++FF+ +LPPIIF +G+ + K  FF+N  +I LF   GT +S  ++  G I F  + D I  L++ D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N  +
Sbjct:   49 EQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVG-GGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAE 241          
The following BLAST results are available for this feature:
BLAST of FC917911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NHX1_ARATH3.150e-9384.08Sodium/hydrogen exchanger 1 OS=Arabidopsis thalian... [more]
NHX2_ARATH5.374e-9384.58Sodium/hydrogen exchanger 2 OS=Arabidopsis thalian... [more]
NHX3_ARATH2.047e-8477.11Sodium/hydrogen exchanger 3 OS=Arabidopsis thalian... [more]
NHX4_ARATH6.615e-6766.48Sodium/hydrogen exchanger 4 OS=Arabidopsis thalian... [more]
NHX1_YEAST4.963e-2230.53Endosomal/prevacuolar sodium/hydrogen exchanger OS... [more]
NHE1_DICDI8.465e-2230.53Sodium/hydrogen exchanger 1 OS=Dictyostelium disco... [more]
SL9A8_RAT3.217e-2131.19Sodium/hydrogen exchanger 8 OS=Rattus norvegicus G... [more]
SL9A8_MOUSE3.217e-2131.19Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc... [more]
NHX5_ARATH3.217e-2135.00Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
SL9A8_MACFA1.222e-2031.96Sodium/hydrogen exchanger 8 OS=Macaca fascicularis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917911 ID=FC917911; Name=FC917911; organism=Citrus clementina; type=EST; length=844bp
CTGAATTTATTTTGTCATAATTTCTGCTCTCTCTCTCTCTCCCGCTGACT
CTCCGTTTCTGGGTTTCAATAATTTGGATTCTTTTTTTACGGCAAATGAG
AAGCGTTACGGTTTGTGAACTGACTGGCTTGTTTGGAGAAAATCAGAGTT
TTAGAGTTGTGAAGAAGAAGTAAAATTAATCTGTATTGAGCAATTGATTG
ATAAAAGCTGTGGTTGCAAAAAATGGATCAAGCAATAATTTCTGTTGTAA
GGAAATTGCAAATGGTGAACACGTCTGATCACAACTCGGTGGTTTCCATA
AACATTTTTGTGGCGCTTCTTTGTGCTTCTATTGTGATTGGTCACCTTCT
TGAAGAAAGCCGGTGGATGAACGAGTCCATTACAGCTCTACTGATTGGAG
TTTGTGCAGGTGTGATTATTTTGCTGACAACTGGGGGAAAAAGCTCACAT
CTGTTTGTGTTCAGTGAAGATCTGTTCTTTATATATGTGTTGCCCCCCAT
TATATTTAATGCAGGATTTCAGGTGAAAAAGAAACAATTTTTCCGCAACT
TCATTACTATCATGCTGTTTGGTGCAATTGGGACATTAGTAAGCTGTACC
ATCATATCACTAGGTGTTATTCAGTTCTTTAAGAAATTGGATATTGGTAC
TCTGGATATAGGAGATTATCTAGCAATTGGTGCCATATTTGCTGCAACAG
ATTCCGTTTGCACGTTGCAGGTGCTTAATCAGGATGACACACCTTTGCTC
TACAGTCTGGTATTTGGGGAGGGTGTTGTTAATGATGCTACATCTGTGGT
TCTTTTCAATGCAATCCAGAGCTTTGACCTCACTCATATAAATA
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