FC917917

Overview
NameFC917917
Unique NameFC917917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12264 contig Ccv1_Contig12264:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917917 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNT 135
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124          
BLAST of FC917917 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNT 135
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 123          
BLAST of FC917917 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNT 135
            E G I DACFKT+GCGSAIASSS+ TEWVKGK I+E  SIKNT
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNT 91          
BLAST of FC917917 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNT 135
            E G I DACFKT+GCGSAIASSS+ TEW+KGK I E  +IKNT
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNT 91          
The following BLAST results are available for this feature:
BLAST of FC917917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ISCU_MOUSE9.665e-1377.27Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN9.665e-1377.27Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
NIFU_BUCAI1.069e-1176.74NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
NIFU_BUCAP6.927e-1172.09NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917917 ID=FC917917; Name=FC917917; organism=Citrus clementina; type=EST; length=632bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGCTG
TGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGGGTGAAAGGGA
AGCAGATACAGGAAGTCTTGTCCATTAAAAACACGTAAGCTCTTTTATCT
CGGTATTGCCTTTGTATTTTCATTTGAGTTAGTAGCAGTTGTTTTCATGT
CTTGGCAGCTTTGATTTATGTTCTCTTTTAGCTTCTTCTTGGTAATTATT
TGGCCCTTTTCTCTTTACCGTGGCATGATTTCTTTATCAACCTTTTTTGT
TGTTTCCCATATGTTTGGTGTTTATTCAGACGATTCAAAATTCCAGACTC
TTATTGGAATATGAATATCGGGTGTTGACCTGATATCTGCCAGACTGTGG
ATTGTCGAGACTAGACGAGACTAGCTGTGAATTTTAGGCAAATATTAAAT
ATACGACAAAGAAGTATCATTTTTCTGCAAGTACATGCTTGTTGTAAAGT
GCTTTATGGCTTGGCAGGGATGAGTTTGTGTTGGGGGTGGAAATATTTTG
TGTGCTTTTGTTGCCTGTAGATGTGGCATAAGTAAATTTCACTCTGTTTT
CCTTTTCGTAGAAATTGGTTAAAACCCTGGTT
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