FC917934

Overview
NameFC917934
Unique NameFC917934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13027 contig Ccv1_Contig13027:68..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.973e-71
Identity = 148/265 (55.85%), Postives = 180/265 (67.92%), Query Frame = 3
Query:  126 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXXXXXXXXXXXXXX-QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG 917
            M+DW  L QSI+ GL+F+YL+AKLIS++L+FK+ENLS+TR N+   +E +           N R  E  +G   +T+S+IAEQGS+R +E                   STELDE F                QKVSN++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYID+VT+LYP W  G S  +    +AA      PMGPVFSS  YEEES N+LK+DAIHAFAREG+++NLLKCIENG
Sbjct:    1 MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTR-NHTTQSEYE-----------NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAA-----GPMGPVFSSLVYEEESDNELKIDAIHAFAREGEVENLLKCIENG 241          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.442e-67
Identity = 143/266 (53.76%), Postives = 177/266 (66.54%), Query Frame = 3
Query:  126 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXXXXXXXXXXXXXX-QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWA-AGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG 917
            M DW  L QS+++GL+FSYL+AKLIS+V++FKE+NLS+TR    +  E K    D      + R   +  G   + +S++AEQGS R++                    STELDE F                QKV +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM+KYI+IVT+LYPTW   G     RG +DAAS +S+  MGPVFSS  Y+EES N+LK+DAIH FAREG+++NLLK IE+G
Sbjct:    1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD------SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEESENELKIDAIHGFAREGEVENLLKSIESG 256          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  534 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAA 770
            N+V+L+LYALYK ATEGPC+ P+P  L    +AKW AW  LG++P E A Q Y+D+V+ L  +  A S   KRG ++ A
Sbjct:   57 NEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPSQ-GKRGADEKA 134          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  534 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSL 743
            N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A Q Y+D+V+ L P+  + S +
Sbjct:   59 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQV 128          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  534 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSK 785
            N+V+L+LYALYK ATEGPC+ P+P       +AKW AW  LG++P E A Q Y+D+V+ L  +  A S    +G  D  + +SK
Sbjct:   57 NEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASS--QGKGGADGKAQESK 138          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBD6_BOVIN (Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  522 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIE 911
            Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P+W    S  K+G+E  A+T      GPV SS  +EE    + K   I  + RE ++D++ K I+
Sbjct:   58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPSWNP-QSPEKKGKE--ANTGFG---GPVVSSLYHEEIIREEDK--DIFDYCRENNIDHITKVIK 179          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBD6_RAT (Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  522 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN 914
            Q  S +  L LYA YK    G C+ P+P+      + KW+AW+ LG   P +AMQ+YI  V +L P W    S  K+G+E ++        GPV SS  +EE    + K   I  + RE ++D++ K I++
Sbjct:   58 QVASREQLLYLYARYKQVKVGNCNIPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGWNPQVS-EKKGKEGSSGFG-----GPVVSSLYHEETIREEDK--NIFDYCRENNIDHITKAIKS 180          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  522 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN 914
            Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P W       K+G+E  A+T      GPV SS  +EE    + K   I  + RE ++D++ K I++
Sbjct:   58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNP-QIPEKKGKE--ANTGFG---GPVISSLYHEETIREEDK--NIFDYCRENNIDHITKAIKS 180          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.228e-13
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 3
Query:  522 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYP-TWAAGSSLSKRGQEDAA 770
            +++  + +++L+ L+KIATEG C   QP A+ ++ARAKW AWQKLG M  EEAM++Y+ +V++  P    AG ++ K  + + +
Sbjct:  249 EEIGAEAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGKMSEMETS 332          
BLAST of FC917934 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.403e-12
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  522 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN 914
            Q  S +  L LYA +K    G C+ P+P+      + KW+AW+ LG   P +AMQ+YI  V +L P W    S  K+G+E ++        GPV SS  +EE    + K   I  + RE ++D++ K I++
Sbjct:   58 QVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGWNPQVS-EKKGKEGSSGFG-----GPVVSSLYHEETIREEDK--NIFDYCRENNIDHIAKAIKS 180          
The following BLAST results are available for this feature:
BLAST of FC917934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ACBP1_ARATH2.973e-7155.85Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
ACBP2_ARATH4.442e-6753.76Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
PECI_MOUSE5.154e-1549.37Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_HUMAN1.148e-1448.57Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_RAT1.958e-1445.24Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBD6_BOVIN2.165e-1337.69Acyl-CoA-binding domain-containing protein 6 OS=Bo... [more]
ACBD6_RAT6.300e-1335.11Acyl-CoA-binding domain-containing protein 6 OS=Ra... [more]
ACBD6_HUMAN6.300e-1336.64Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]
ACBP3_ARATH8.228e-1340.48Acyl-CoA-binding domain-containing protein 3 OS=Ar... [more]
ACBD6_MOUSE1.403e-1234.35Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA44BC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917934 ID=FC917934; Name=FC917934; organism=Citrus clementina; type=EST; length=917bp
CACGATCTCACAAATCAACCTCGGAAGCATCAATTTGCACCCAAGTTCAA
AGGTTTTAGCCTTGTCTTCCATCCAAAATTTGTCTCATTTTCTAGGGTTA
GGGTTTTCTTTCAGTTACAAAAGCCATGAGTGATTGGCAGCCTCTTCTGC
AATCAATACTCATAGGCTTACTCTTCTCTTATCTTGTGGCTAAGTTAATC
TCTGTGGTCCTTTCTTTCAAAGAAGAGAATCTCTCTATCACTCGCAGTAA
CAATAACAACTACAATGAACCAAAGCGGACTAAAGACGACGTCGTCGTCG
CCGCCCCGAATCCGCGCGGGCCGGAGGCGGATTCGGGTCGGCCTCACGAT
ACGGAGTCGATGATCGCGGAGCAAGGAAGCGTGAGGAACGAAGAGAGCTT
GCCTTGCAGTGATGTTGACAGCGATGGTGACGATGATTGGGAGGGTGTCG
AGTCTACGGAACTGGATGAGATGTTCAGTGCGGCCACCGCATTTGTGGCG
GCCAGTGCTGCTGCCTCGTCGCAGAAGGTGTCCAATGATGTGCAGTTGCA
GCTCTATGCGTTGTACAAGATTGCCACTGAAGGTCCCTGTAGTGCTCCCC
AGCCTTCTGCGTTGAAAATGACCGCTCGGGCCAAGTGGCAAGCATGGCAG
AAATTGGGTGCCATGCCTCCAGAAGAAGCAATGCAGAAATACATTGATAT
TGTTACAGAGCTGTATCCTACTTGGGCTGCTGGTTCATCTTTGAGCAAAC
GTGGACAAGAAGATGCGGCAAGCACAGATTCCAAAGCACCAATGGGTCCT
GTTTTCAGCTCTTTTGCGTATGAGGAGGAATCTGGAAATGATTTGAAAAT
GGATGCTATCCATGCCTTTGCTAGAGAAGGAGACATGGATAATCTGCTTA
AATGTATTGAAAATGGT
back to top