FC917952

Overview
NameFC917952
Unique NameFC917952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_DROPS (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA17444 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.598e-39
Identity = 88/182 (48.35%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  118 NLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPIQGKL 663
            N+L  +      SC C   PAH H+  +       A  T +  + QKEYAFEM+AS++RFGPG + EVG D++NLGAKKV +VTD  V KL +++ A+  L + GI Y+V+D  RVEP D+S+  A +YA+    DAFLA+GGGSV+DTAK  NL++S   A+FLD+VN P+G+G  I  KL
Sbjct:    5 NVLNLINTIVANSCKC---PAHSHNYGS-------AAPTGVQ-TGQKEYAFEMSASTVRFGPGVSVEVGADLRNLGAKKVCLVTDRNVAKLPSVKVALDSLARHGINYEVYDETRVEPTDASLWHAADYARQNEFDAFLAIGGGSVMDTAKAANLFSSDREAEFLDYVNCPIGKGKEISVKL 175          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_BOVIN (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Bos taurus GN=ADHFE1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.275e-38
Identity = 90/193 (46.63%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   73 MAAVRISPSRATRAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPI 651
            MAA R      +R ++LLR +Q     +C C   P+H H    T  QA     +     +  +YAFEMA S+IR+G G TKEVGMD+Q++GAK V ++TD  + +L  ++  +  L + GI + V+D VRVEP D+S  +AIE+AK    DAFLAVGGGS IDT K  NLY+S P++DFLD+VNAP+G+G P+
Sbjct:    1 MAAAR------SRVVHLLRLLQRA---ACQC---PSHSH----TYSQAPGLSPS----GKTTDYAFEMAVSTIRYGAGVTKEVGMDLQSMGAKNVCLMTDKNLSQLPPVQTVMDSLVKNGINFKVYDHVRVEPTDTSFMEAIEFAKKGAFDAFLAVGGGSTIDTCKAANLYSSSPDSDFLDYVNAPIGKGKPV 173          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_DROME (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Drosophila melanogaster GN=T3dh PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.586e-38
Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 1
Query:  118 NLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPIQGKL 663
            N+L  +      SC C   PAH H+  +    A +        + + EYAFEM+AS++RFGPG + EVG D++NLGA+KV +VTD  V +L +++ A+  L + GI Y+V+D  RVEP D S+  A+E+A+    DAFLA+GGGS +DTAK  NL++S  NA+FLD+VN P+GRG  I  KL
Sbjct:    5 NVLGLINTIVANSCKC---PAHSHNYGSAAPTASQ--------TGRMEYAFEMSASTVRFGPGVSAEVGADLRNLGARKVCLVTDKNVVQLPSVKVALDSLARNGINYEVYDETRVEPTDGSMWHAVEFARGKEFDAFLAIGGGSAMDTAKAANLFSSDANAEFLDYVNCPIGRGKEISVKL 175          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_MOUSE (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Mus musculus GN=Adhfe1 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.244e-37
Identity = 85/181 (46.96%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  109 RAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPI 651
            R  +LLR +Q T   +C C   P H H    T  QA      P    +  +YAFEMA S+IR+G G TKEVGMD+QN+GAK V ++TD  + +L  ++  +  L + GI++ V+D VRVEP D S   AIE+AK    DA++AVGGGS +DT K  NLY S P+++FLD+VNAP+G+G P+
Sbjct:    8 RVTHLLRHLQST---ACQC---PTHSH----TYSQA------PGPSGKTADYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQIVMDSLSKNGISFQVYDDVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGSTMDTCKAANLYASSPHSEFLDYVNAPIGKGKPV 172          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_RAT (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Rattus norvegicus GN=Adhfe1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36
Identity = 81/181 (44.75%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  109 RAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPI 651
            R  +LLR +Q T   +C C   P H H        +     T        +YAFEMA S+IR+G G TKEVGMD+QN+GAK V ++TD  + +L  ++  +  L + GI++ V+D VRVEP D S   AIE+AK    DA++AVGGGS +DT K  NLY   P+++FLD+VNAP+G+G P+
Sbjct:    8 RVTHLLRHLQST---ACQC---PTHSHTYSQVPGLSPSGKTT--------DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQIVMDSLSKNGISFQVYDNVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGSTMDTCKAANLYACSPHSEFLDYVNAPIGKGKPV 174          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_AEDAE (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Aedes aegypti GN=AAEL003729 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 77/170 (45.29%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  154 SCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPIQGKL 663
            SCP HS                R+    ++ S + EYAFEM++S+IR+GPG +KE+G D+QNL AK V +VTD  V KL +++ A   L + GI Y V+D  RVEP D S+  A EYA+    D+F+A+GGGSVIDT K+ NL+++   A+FLD+VNAP+G+   +  KL
Sbjct:   20 SCPAHS----------------RSSTGGLNVSSENEYAFEMSSSTIRYGPGVSKELGHDLQNLNAKNVCIVTDRNVAKLNSVKVAFDSLTRCGIQYQVYDETRVEPTDQSLLHAAEYARQNKFDSFVAIGGGSVIDTCKVANLFSADREAEFLDYVNAPIGKAKEVNVKL 173          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_PONAB (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Pongo abelii GN=ADHFE1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.228e-36
Identity = 86/185 (46.49%), Postives = 118/185 (63.78%), Query Frame = 1
Query:   97 SRATRAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPI 651
            SRA R   LLR +Q     +C C   P H H    T  QA     +     +  +YAFEMA S+IR+G G TKEVGMD+QN+GAK V ++TD  + KL  ++ A+  L + GI + V+D VRVEP D+S  +AIE+A+    DA++AVGGGS +DT    NLY S P++DFLD+V+AP+G+G P+
Sbjct:    5 SRA-RVAYLLRQLQRA---ACQC---PTHSH----TYSQAPGLSPS----GKTTDYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSKLPPVQVAMDSLVKNGIPFTVYDNVRVEPTDASFMEAIEFAQKGAFDAYVAVGGGSTMDTCMAANLYASSPHSDFLDYVSAPIGKGKPV 174          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_XENTR (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Xenopus tropicalis GN=adhfe1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 84/182 (46.15%), Postives = 116/182 (63.74%), Query Frame = 1
Query:   97 SRATRAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRG 642
            +R  + I+LLR +Q     SC C   PAH H    T  QA      P+   ++ EYAFEMA S+IR+G   T+E+GMD+QNLGA+ V V+TD  + +L  ++  +  L +  +++ ++D VRVEP D S   AIE+AK    DA++ VGGGSVIDT K  NLY+S P ADFLD+VN P+G+G
Sbjct:    3 ARRDQVIHLLRQLQRA---SCKC---PAHSH----TYSQA------PVT-GRKTEYAFEMAVSNIRYGENVTQEIGMDLQNLGARNVCVMTDRNLVELSPVKAVLNSLVKNNVSFKLYDRVRVEPTDKSFMDAIEFAKKGQFDAYVGVGGGSVIDTCKAANLYSSSPGADFLDYVNPPIGKG 167          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_HUMAN (Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Homo sapiens GN=ADHFE1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 83/181 (45.86%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  109 RAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGRGLPI 651
            R   LLR +Q     +C C   P H H    T  QA     +     +  +YAFEMA S+IR+G   TKEVGMD++N+GAK V ++TD  + KL  ++ A+  L + GI + V+D VRVEP DSS  +AIE+A+    DA++AVGGGS +DT K  NLY S P++DFLD+V+AP+G+G P+
Sbjct:    8 RVAYLLRQLQRA---ACQC---PTHSH----TYSQAPGLSPS----GKTTDYAFEMAVSNIRYGAAVTKEVGMDLKNMGAKNVCLMTDKNLSKLPPVQVAMDSLVKNGIPFTVYDNVRVEPTDSSFMEAIEFAQKGAFDAYVAVGGGSTMDTCKAANLYASSPHSDFLDYVSAPIGKGKPV 174          
BLAST of FC917952 vs. ExPASy Swiss-Prot
Match: HOT_ANOGA (Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Anopheles gambiae GN=AGAP006646 PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 78/177 (44.07%), Postives = 117/177 (66.10%), Query Frame = 1
Query:  109 RAINLLRTVQFTHPPSCPCHSNPAHHHHNPTTVHQAKRALATPIDYSQQKEYAFEMAASSIRFGPGCTKEVGMDMQNLGAKKVMVVTDGTVKKLEAMRQAIQGLEQAGIAYDVFDGVRVEPKDSSIKQAIEYAKPYGADAFLAVGGGSVIDTAKLMNLYTSFPNADFLDFVNAPLGR 639
            R ++L+RTV  +   SCP HS P               A++     S +K+ AFEM++S+IR+GPG T+E+G D+QNLGAK V VV+D  V +L +++  +  + +AGI   +FD VRVEP + S++ AI++A+ +  DAF+A+GGGS IDT K+ NLY++   A+FLD+VN P+GR
Sbjct:    6 RIVSLMRTVS-SGSCSCPAHSRPV--------------AISQQTSCSAEKDTAFEMSSSTIRYGPGVTRELGHDLQNLGAKSVCVVSDRNVLQLPSVKVGLDAIVRAGIEPVLFDAVRVEPTNESLQTAIDFARSHRFDAFVAIGGGSAIDTCKVANLYSADREAEFLDYVNVPIGR 167          
The following BLAST results are available for this feature:
BLAST of FC917952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HOT_DROPS6.598e-3948.35Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
HOT_BOVIN3.275e-3846.63Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_DROME5.586e-3846.15Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
HOT_MOUSE1.244e-3746.96Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_RAT3.065e-3644.75Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_AEDAE4.003e-3645.29Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]
HOT_PONAB5.228e-3646.49Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_XENTR8.917e-3646.15Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_HUMAN8.917e-3645.86Hydroxyacid-oxoacid transhydrogenase, mitochondria... [more]
HOT_ANOGA8.917e-3644.07Probable hydroxyacid-oxoacid transhydrogenase, mit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DE08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917952 ID=FC917952; Name=FC917952; organism=Citrus clementina; type=EST; length=664bp
CGCCCACCATGACGCTGCGCCCTTCATGCGCGTCTTTTGCTCACATTCCC
CCTTAAAAATCGATCAGATATCATGGCCGCCGTCAGAATCAGCCCTTCGC
GGGCCACGCGTGCCATCAACCTCCTCCGCACTGTGCAATTCACCCATCCG
CCGTCATGCCCGTGCCACTCTAACCCTGCGCATCACCACCACAATCCTAC
CACAGTTCACCAGGCCAAGCGTGCACTCGCGACGCCCATTGACTACTCGC
AACAGAAGGAATATGCGTTTGAAATGGCAGCCTCGTCCATCAGGTTTGGC
CCCGGATGCACCAAGGAAGTCGGAATGGACATGCAAAACCTGGGTGCGAA
GAAGGTCATGGTTGTGACCGATGGCACTGTGAAGAAGCTAGAAGCTATGA
GGCAGGCGATCCAGGGTCTGGAGCAGGCCGGCATTGCGTACGACGTCTTC
GATGGCGTGCGTGTTGAGCCCAAGGACAGCAGCATCAAGCAGGCCATCGA
ATATGCGAAGCCGTACGGAGCCGATGCCTTTTTGGCCGTGGGCGGTGGCA
GTGTTATCGACACAGCGAAGCTCATGAATCTGTACACTTCCTTCCCCAAT
GCCGACTTTCTCGACTTCGTCAATGCGCCACTGGGTCGCGGCCTCCCCAT
CCAGGGCAAGCTGA
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