FC917996

Overview
NameFC917996
Unique NameFC917996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917996_ssr47 microsatellite FC917996_ssr47:47..66. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917996_ssr346 microsatellite FC917996_ssr346:346..357. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917996_ssr390 microsatellite FC917996_ssr390:390..407. BLAST: Citrus ESTs to Prunus persica proteins V1
FC917996_ssr67 microsatellite FC917996_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13552 contig Ccv1_Contig13552:77..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGNDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 877
            T+W+GDL  WMD TF+   ++   + VNVKV+R+K +       Y FV+F S AAAE+ L  Y+ +++P     F+LNWAT  G         D   SIFVGDL P   DS L  TF S YPS   AK+I+D  TG ++
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSR 224          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+AT+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKG 138          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.505e-22
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            ++W+GDL  +MDE F+   F+  G+ V++VK+IRN+ TG   GY FVEF   A AEK L   +G  +P     + F+LN+ T+    ++ +   + S+FVGDL PDV D +L E F   YPS +G KV++D  TG +KG
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKG 138          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 58/154 (37.66%), Postives = 89/154 (57.79%), Query Frame = 2
Query:  434 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-NDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            N SN   + DE      T+W+G+L  W+ E F+   ++  G+ V VK+IRN+ TG + GY FVEF S   A   + S +   +P T+  F+LNWA+  G  ++     S+ SIFVGDL+P+V +  +   F+S+Y S K AK++ D  T  ++G
Sbjct:   77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRG 229          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--FRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 856
            ++W+GDL  +MDE F+   FS  G+    VK+I ++ TG S GY FVE    A+ ++ +Q  +G L+P ++ P  F+LN+AT+    +R E   + S+FVGDL  +V D  L + F  K+PS KGAKV+ D
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD 134          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.541e-17
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  473 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGNDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 862
            ++W+G+L  +MDE F+   F+  G+ VV +++IR+K TG++ GYGFVE     A E+ L+  +G  +P    P R   +    N  +    S  S+FV DL PDV D +L E F   + S    K+++D+N
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLS--RSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN 131          
BLAST of FC917996 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.412e-12
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  437 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGND-----RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 880
            G++N         +++GDL    D+  +   ++  G+  +NV+++ N               ++GY FV+F S   A   L   +G L+PN  ++  +LNWAT S ++        ++ ++ SIFVGDLAP+VT+S L E F ++Y S   AK++ D  TG +KG
Sbjct:   43 GASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKG 206          
The following BLAST results are available for this feature:
BLAST of FC917996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CSX1_SCHPO1.778e-2343.17RNA-binding post-transcriptional regulator csx1 OS... [more]
TSAP1_RAT5.174e-2343.17tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN5.174e-2343.17tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN5.174e-2343.17tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_MOUSE6.758e-2343.17tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_PONAB1.505e-2242.45tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
YG41_SCHPO2.568e-2237.66Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSP1L_DANRE4.843e-2141.22tRNA selenocysteine 1-associated protein 1-like OS... [more]
TSAP1_DANRE5.541e-1735.88tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST1.412e-1231.52Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA13DD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917996 ID=FC917996; Name=FC917996; organism=Citrus clementina; type=EST; length=925bp
CGCTCGCTCTTTACGCGTAGCAGAGTTTAAAACTAAAATCTTTCACGAGA
GAGAGAGAGAGAGAGAGTGAGTGAGTGAGTTGAAAAAAGAAAATTTTTTA
TTAGTTGATTTTAGTCCTCCAATCAGATCAGAGAGGATGCAGCAATCTAA
CGGTGGAGACGCGAACGCCGCGGCGGCGGTGTCCGGAGGAGCTGGAGGAG
GATCTCAGCCGACGCCACAGCAGCCATACCACTGGGTCCCGCCGCACCAG
CAGCAGTGGATGGCTATGATGCAGTATCCGGCGGCGGCGATGGCCATGAT
GCAACAGCAGCAGATGATGATGTATCCTCATCATTATATGCCGTACGGCG
GCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCGTAAAGCAGCAGCAG
CAGCAGCAACATGGATTGAGTAACGGAAAACAAAACGGATCTAATAATAA
TTTTACTAATGACGAGACTAAGACTATATGGATTGGTGATTTGTTTCATT
GGATGGACGAAACTTTTCTTCATAATTGTTTCTCACATACTGGTCAGGTT
GTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGTCAGTCAGAAGGGTA
TGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGAGAAAGTTTTGCAGA
GCTATAGTGGTTCTCTAATGCCAAATACCGACCAGCCTTTCCGACTTAAT
TGGGCGACCTTTAGTGGCAATGATAGACGAACAGAAGCATGTTCTGATCT
GTCTATATTTGTAGGAGATTTGGCTCCAGATGTAACTGATAGCATATTGC
AGGAGACCTTTTCTAGCAAGTATCCATCTGTAAAAGGAGCCAAAGTTATC
ATCGACTCAAATACTGGGCGTACAAAAGGTACGGTTTTGTTAGATTTGGT
GAGAAAATGAGAGGTCAGGGCCATG
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