FC918010

Overview
NameFC918010
Unique NameFC918010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918010_ssr297 microsatellite FC918010_ssr297:297..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8301 contig Ccv1_Contig8301:186..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: HGL2_ARATH (Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.934e-59
Identity = 137/262 (52.29%), Postives = 161/262 (61.45%), Query Frame = 1
Query:   37 VDMSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNXXXXXXXXXXXXXXXXXXXXTTVEISSENSGHTRSRSDADFXXXXXXXXXXXXXXXXXXSXXXXXXXXX-YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKA--CCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGKCPPGATSTSSCSAGNDQKKQNL 813
            VDMS+  PT   KDFF+SPALSLSLAGIFR A + +                         TVE+SSENSG TRSRS+ D                   +          YHRHT +QIR MEALFKE+PHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK IQERHENSLLK+E+EKLREENKAMRE+ +KA   CPNCG                L +EN++LKAE++KLRAA+G+ P      +SCS   + +  +L
Sbjct:    5 VDMSSKQPT---KDFFSSPALSLSLAGIFRNASSGST-------NPEEDFLGRRVVDDEDRTVEMSSENSGPTRSRSEEDLEGEDHDDEEEEEEDGAAGNKGTNKRKRKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAELEKLREENKAMRESFSKANSSCPNCGGG-----------PDDLHLENSKLKAELDKLRAALGRTP--YPLQASCSDDQEHRLGSL 243          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.941e-51
Identity = 119/232 (51.29%), Postives = 141/232 (60.78%), Query Frame = 1
Query:   43 MSNNPPTSRTKDFFASPALSLSLAGIFRGAGASAAANNXXXXXXXXXXXXXXXXXXXXTTVEISSENSGHTRSRSDADFXXXXXXXXXXXXXXXXXXSXXXXXXXXXYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINK-ACCPNCGMATTSRD-----TSMTTEEQQLRIENARLKAEV 720
            M  N P  RTKDFFA+PALSL+LAG+F      AA+                        VEISSEN+G    +S +                              YHRHTAEQIR MEALFKESPHPDE+QRQQ+SKQLGL+ RQVKFWFQNRRTQIK +QERHENSLLKSE+EKL++E++AMRE   K + C NCG+  TS D     T+  T EQ+LR+E A+LKAEV
Sbjct:    1 MGTNRPRPRTKDFFAAPALSLTLAGVFGRKNGPAASGGDGVEEGDEEVQAAGE-----AAVEISSENAGPGCRQSQSG----GGSGEDGGHDDDDGEGSNKKRRRKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIKAVQERHENSLLKSELEKLQDEHRAMRELAKKPSRCLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEV 223          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.361e-38
Identity = 92/223 (41.26%), Postives = 115/223 (51.57%), Query Frame = 1
Query:   79 FFASPALSLSLAGIFRGAGASAAANNXXXXXXXXXXXXXXXXXXXXTTVEISSENSGHTRSRSDADFXXXXXXXXXXXXXXXXXXSXXXXXXXXXYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 747
            F +SPALSL+LA    G  +                            +E+ +E S       D                               YHRHT +QI+E+EA+FKE PHPDEKQR +LSK+LGL PRQVKFWFQNRRTQ+K   ERHENSLLK E +KLR EN ++REA + A C  CG      + S+  EE  LR+ENARLK E+ ++ A   K
Sbjct:   13 FTSSPALSLALADAVAGRNSGGGGKMVTAAHGGVGGGGGGGRAKARDALEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSL--EEHHLRVENARLKDELSRVCALAAK 233          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.361e-38
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAV-------GKCPPGATSTSSC 780
            YHRHTA QI++MEALFKE PHPD+KQR +LS++LGL PRQVKFWFQNRRTQ+K  Q+R +N +L++E E L+ +N  ++ AI    CPNCG A    D  M+ EEQQLRIENARLK E+++L           G+ P  +TS  SC
Sbjct:  138 YHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKSDNFRLQAAIRNVVCPNCGHAAVLAD--MSYEEQQLRIENARLKDELDRLACIATRYGGGGGRQPVLSTSALSC 281          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.361e-38
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAV-------GKCPPGATSTSSC 780
            YHRHTA QI++MEALFKE PHPD+KQR +LS++LGL PRQVKFWFQNRRTQ+K  Q+R +N +L++E E L+ +N  ++ AI    CPNCG A    D  M+ EEQQLRIENARLK E+++L           G+ P  +TS  SC
Sbjct:  138 YHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKSDNFRLQAAIRNVVCPNCGHAAVLAD--MSYEEQQLRIENARLKDELDRLACIATRYGGGGGRQPVLSTSALSC 281          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: HDG11_ARATH (Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.361e-38
Identity = 76/128 (59.38%), Postives = 96/128 (75.00%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 747
            YHRHTA+QI+ +E+ FKE PHPDEKQR QLS++LGLAPRQ+KFWFQNRRTQ+K   ER +NS LK+E +K+R EN A+REA+  A CPNCG    S D     +EQ+LRIENA L+ E+E++     K
Sbjct:   36 YHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLKAQHERADNSALKAENDKIRCENIAIREALKHAICPNCGGPPVSEDPYF--DEQKLRIENAHLREELERMSTIASK 161          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.417e-37
Identity = 82/150 (54.67%), Postives = 103/150 (68.67%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQ-ERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK---------CPPGATSTSSCS 783
            YHRHT +QI+E+EA+FKE PHPDEKQR +LS++L L  RQVKFWFQNRRTQ+K  Q ERHEN+LL+ E +KLR EN  +REA+    C +CG A    + S+  EEQ LRIENARLK E++++ A  GK           PG  S  +CS
Sbjct:  126 YHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMKQTQIERHENALLRQENDKLRAENMTIREAMRNPMCASCGGAAVLGEVSL--EEQHLRIENARLKDELDRVCALAGKFLGRPISSISSPGPPSLQACS 273          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.417e-37
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 747
            YHRHT  QI+EMEA FKE PHPD+KQR++LS++LGL P QVKFWFQN+RTQ+K   ERHENS L+S+ EKLR EN   +EA++ A CPNCG      +  M+ +E  LRIENARL+ E++++ A   K
Sbjct:  108 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGE--MSFDEHHLRIENARLREEIDRISAIAAK 233          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: HDG2_ARATH (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.123e-37
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 747
            YHRHT  QI+EMEA FKE PHPD+KQR+QLS++L L P QVKFWFQN+RTQ+K   ERHENS L++E EKLR +N   REA+  A CPNCG  T   +  M+ +E QLR+ENARL+ E++++ A   K
Sbjct:   68 YHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFWFQNKRTQMKNHHERHENSHLRAENEKLRNDNLRYREALANASCPNCGGPTAIGE--MSFDEHQLRLENARLREEIDRISAIAAK 193          
BLAST of FC918010 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.200e-36
Identity = 72/128 (56.25%), Postives = 95/128 (74.22%), Query Frame = 1
Query:  364 YHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKSEIEKLREENKAMREAINKACCPNCGMATTSRDTSMTTEEQQLRIENARLKAEVEKLRAAVGK 747
            YHRHT  QI+E+EA FKE PHPD+KQR++LS++LGL P QVKFWFQN+RTQ+KT  ERHEN+ L++E EKLR EN   +EA+  A CPNCG      +  M+ +E  LR+ENARL+ E++++ A   K
Sbjct:   92 YHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGE--MSFDEHHLRLENARLRDEIDRISAIAAK 217          
The following BLAST results are available for this feature:
BLAST of FC918010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HGL2_ARATH2.934e-5952.29Homeobox-leucine zipper protein GLABRA 2 OS=Arabid... [more]
ROC9_ORYSJ2.941e-5151.29Homeobox-leucine zipper protein ROC9 OS=Oryza sati... [more]
ROC4_ORYSJ6.361e-3841.26Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
ROC3_ORYSJ6.361e-3855.48Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC3_ORYSI6.361e-3855.48Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
HDG11_ARATH6.361e-3859.38Homeobox-leucine zipper protein HDG11 OS=Arabidops... [more]
ROC6_ORYSJ2.417e-3754.67Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ROC2_ORYSJ2.417e-3757.81Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
HDG2_ARATH4.123e-3758.59Homeobox-leucine zipper protein HDG2 OS=Arabidopsi... [more]
ROC7_ORYSJ1.200e-3656.25Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AE02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918010 ID=FC918010; Name=FC918010; organism=Citrus clementina; type=EST; length=833bp
AAGAGAATTACAGAATTTCTCATTGCCATGGGCGTCGTCGACATGTCTAA
CAACCCACCCACTTCTCGCACCAAAGACTTCTTTGCCTCTCCTGCTCTCT
CCCTAAGCCTTGCTGGAATATTCCGGGGCGCAGGCGCCAGCGCCGCTGCG
AATAATGAAGTGGAGGAAGGATATGAAGGCAGTGGAGGAGCCGGAGGAGG
ATCAAAAAGAGAAGAGACAACGGTGGAGATTAGTAGCGAAAACTCTGGCC
ACACAAGATCAAGATCAGATGCCGACTTTGATGGAGGCGGTGATGGTGAT
GATGATGATGGTGATGGTGATGGTGATGGTGATAGCAAGAACAAGAAGAA
GAAAAGAAAGAAGTACCATCGTCACACAGCCGAGCAGATTAGAGAAATGG
AGGCGCTTTTTAAAGAGTCACCACATCCGGATGAGAAACAAAGGCAGCAA
TTGAGCAAGCAATTAGGCCTTGCCCCTAGGCAAGTCAAGTTTTGGTTCCA
AAATCGTCGAACACAAATCAAGACAATTCAAGAGCGCCATGAAAATTCAT
TATTGAAATCAGAAATAGAGAAACTCCGAGAAGAGAACAAAGCCATGAGA
GAGGCCATTAATAAAGCTTGTTGCCCTAATTGTGGCATGGCCACAACCAG
CAGAGACACTTCCATGACAACTGAAGAACAACAATTACGAATCGAAAATG
CTAGGCTCAAAGCCGAGGTAGAAAAGCTAAGAGCGGCTGTGGGGAAATGC
CCGCCAGGGGCAACATCAACAAGCTCATGTTCAGCTGGAAATGATCAAAA
AAAACAAAACCTCTTTAGATTTTTACACTGGGA
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