FC918043

Overview
NameFC918043
Unique NameFC918043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918043_ssr721 microsatellite FC918043_ssr721:721..730. BLAST: Citrus ESTs to Prunus persica proteins V1
FC918043_ssr279 microsatellite FC918043_ssr279:279..290. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11754 contig Ccv1_Contig11754:71..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEE
Sbjct:   82 AANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEE 156          

HSP 2 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            AST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLALTVLIGAAA+GSKVSPADAAYGE++
Sbjct:    2 ASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAA 83          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.641e-34
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEE
Sbjct:   79 AANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEE 153          

HSP 2 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 3
Query:    3 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+LIG AA+GSKVSPADAAYGE++
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAA 80          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.805e-33
Identity = 62/75 (82.67%), Postives = 72/75 (96.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEE
Sbjct:   82 AANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEE 156          

HSP 2 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            A + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLALT+L+GAAAVGSKVSPADAAYGE++
Sbjct:    2 AYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAA 83          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.664e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEE
Sbjct:   77 AANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEE 151          

HSP 2 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 3
Query:    3 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLALT+LIG AA+GSKVSPADAAYGE++
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAA 78          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.785e-33
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEE
Sbjct:   78 AANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEE 152          

HSP 2 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 56/81 (69.14%), Postives = 61/81 (75.31%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+VLIGAAAVGSKVSPADAAYGE++
Sbjct:    2 ASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSVLIGAAAVGSKVSPADAAYGEAA 79          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.066e-32
Identity = 61/75 (81.33%), Postives = 71/75 (94.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+
Sbjct:   86 AANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPED 160          

HSP 2 Score: 101.293 bits (251), Expect = 7.166e-21
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            AST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRRLALTVLIGAAAVGSKVSPADAAYGE++
Sbjct:    2 ASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAA 87          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.392e-32
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPK NTDFL YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEE
Sbjct:   87 AANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEE 161          

HSP 2 Score: 117.857 bits (294), Expect = 7.399e-26
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLH HALS++ ART+SS   QR+VS++KP Q+VCRAQKQ+  QEDDG++V  SRRLALTVLIGAAA+GSKVSPADAAYGE++
Sbjct:    2 ASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSRRLALTVLIGAAAIGSKVSPADAAYGEAA 88          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.429e-31
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGK KTNTDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEE
Sbjct:   83 AANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157          

HSP 2 Score: 92.8189 bits (229), Expect = 2.549e-18
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSSQRH--VSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            AS+ CFL HHA ST PA TS +  H  V  IKP+Q++CRAQK +   E+  +AVSRRLALT+LIG+AAVG+K++PA+AAYGE++
Sbjct:    2 ASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAA 84          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.303e-30
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+
Sbjct:   85 AANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQ 159          

HSP 2 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQ-KQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ KQ+  + D     +VSRRLALT+LIGAAAVGSKVSPADAAYGE++
Sbjct:    2 ASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAA 86          
BLAST of FC918043 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.303e-30
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  620 AANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEE 844
            AANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+
Sbjct:   84 AANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQ 158          

HSP 2 Score: 105.145 bits (261), Expect = 4.963e-22
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 3
Query:    3 ASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESS 245
            ASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ+  ++D     +VSRRLALTVLIGAAAVGSKVSPADAAYGE++
Sbjct:    2 ASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLALTVLIGAAAVGSKVSPADAAYGEAA 85          
The following BLAST results are available for this feature:
BLAST of FC918043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_CUCSA5.112e-3590.67Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLTU9.641e-3488.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH2.805e-3382.67Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLLC3.664e-3385.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA4.785e-3385.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SPIOL1.066e-3281.33Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_TOBAC1.392e-3285.33Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_FRIAG3.429e-3184.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC1.303e-3081.33Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP2_TOBAC1.303e-3081.33Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918043 ID=FC918043; Name=FC918043; organism=Citrus clementina; type=EST; length=846bp
TGGCTTCAACTCAATGCTTCTTGCACCACCATGCACTCTCTACTACACCA
GCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAAGCCCACCCA
GATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCG
CCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTC
GGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCTAGTACTTC
TCTTTTTATCTTTATTACTCATTTGCCGCTATCTATCTATCTACTCTTTT
TGACAGTTCGTGCATGCACTTAGAAAGCTTTCTTTCCCAGTTCTTGAAAT
TGGAATGATTTTATAATTATGATAACATATATTGAATGTACGAGTAATGT
TAGAGCCACATACTCTTTCGTGTGAAAACTGACGCGGCACAATAGTATTG
GATGGAATAAAACAAATTACGGAACCTATGTGTGCGGCTGTATCACTAGC
CTGTTGAGTGTAACAGTGGTATGAGCCTAATTTAAAGAAAGAAATTGGGG
TCATGATAATAATAGTATGATGATGAAAATGCTTTTTTTTTTCGAATTAA
CTTGAACTGTAATTTTGTTGCAGCCAATGTGTTTGGTAAGCCAAAGACCA
ACACTGACTTCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCC
TCAAAATGGAACCCCAGCAAAGAGAGAGAGTTCCCAGGTCAGGTTCTTAG
ATACGAAGACAACTTTGATTCTAACAGCAATGTCTCCGTCATAATCACTC
CAACTGACAAGAAATCCATCACTGACTACGGTTCCCCCGAGGAATT
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