FC918048
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 9.184e-59 Identity = 117/200 (58.50%), Postives = 136/200 (68.00%), Query Frame = 1 Query: 136 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 735 MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT EDMKYA++KLDDTEFRN ++ G + V+ Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH-------GGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 8.636e-41 Identity = 92/188 (48.94%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 142 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT GVV++T ED+KYA+RKLDDT+FR+ Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.128e-40 Identity = 94/182 (51.65%), Postives = 111/182 (60.99%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 166.777 bits (421), Expect = 1.473e-40 Identity = 93/182 (51.10%), Postives = 111/182 (60.99%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 164.851 bits (416), Expect = 5.598e-40 Identity = 93/182 (51.10%), Postives = 110/182 (60.44%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSR----RSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 7.311e-40 Identity = 92/187 (49.20%), Postives = 111/187 (59.36%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39 Identity = 90/191 (47.12%), Postives = 112/191 (58.64%), Query Frame = 1 Query: 133 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 E G IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR+ Sbjct: 8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39 Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39 Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39 Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1 Query: 160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182 The following BLAST results are available for this feature:
BLAST of FC918048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC918048 ID=FC918048; Name=FC918048; organism=Citrus clementina; type=EST; length=874bpback to top |