FC918053

Overview
NameFC918053
Unique NameFC918053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918053_ssr789 microsatellite FC918053_ssr789:789..804. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14065 contig Ccv1_Contig14065:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC918053 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.422e-54
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 2 
Query:   20 GLHYLF*FKLQLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 451
            GL  L  F  +LYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:  110 GLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254
[Close]
BLAST of FC918053 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.387e-54
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 2 
Query:   20 GLHYLF*FKLQLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 451
            GL  L  F  +LYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:  109 GLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253
[Close]
BLAST of FC918053 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.187e-53
Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 2 
Query:   41 FKLQLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 451
            F  +LYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct:  117 FTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254
[Close]
BLAST of FC918053 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.025e-51
Identity = 98/138 (71.01%), Postives = 113/138 (81.88%), Query Frame = 2 
Query:   41 FKLQLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 451
            F  +LYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP   I NFTN
Sbjct:  121 FTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258
The following BLAST results are available for this feature:
BLAST of FC918053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC1_ARATH6.422e-5468.97Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
AOC2_ARATH8.387e-5468.97Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC4_ARATH3.187e-5371.74Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC3_ARATH1.025e-5171.01Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA92DH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA92DH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918053 ID=FC918053; Name=FC918053; organism=Citrus clementina; type=EST; length=844bp
CTTAATTTGAAATTGTCACGGCCTGCATTATTTATTTTAATTTAAATTAC
AGTTATATACTGGAGACCTGCAAAAGAGGTTGGGAATAACAGCGGGTTTA
TGCATTTTGATCGAAAACAAACCAGAAAAGAAAGGTGACCGATATGAAGC
AATTTACAGCTTCTACTTTGGAGACTATGGTCACATAGCTGTGCAAGGAC
CGTATTTGACCTATGAGGACACTTATCTGGCTGTGACTGGTGGATCCGGC
ATCTTCGAGGGAGTGTATGGGCAGGTTAAGCTGCAGCAACTTGTGTTTCC
ATTTAAGCTGTTTTACACATTTTATTTGAAGGGCATTAAGGACTTGCCAG
AAGTGCTTCTGGGGAAGCCGGTGGATCCGCACCCTGGTGTTGAGCCCTCC
CCTGCTGCTAAGGCTTGTGAGCCTGGTGCAGCCATTGACAATTTCACTAA
TTAGTTAGGGATATGAGGACATCTTTAATTGGGTTGTTTTTTAGTCAAGT
GAATAATGTGTGCAAGCATATTGGCTCTAGTGATATGATGATGAAGATGG
TGATGGCCAAATAACAAGGTGGGAGGTTGTTTTTTTTTTCTTGGGTTTTG
TTACCGACGTTTTGCTTTCTTGGGGTAGCTTTTGAGGGCAACTTTTGTTT
AATTGTGGTCTCAAACTCGCAATAGTGATATGCATGGCTGTATTTTGAGT
GCTTTTGCCATTTGGTGAATTGCGCAGATCCACCTTCAACGACAACAGAA
TATGACAGTCTGTGCCTCTGTTGTAGTGCACTGGCAGGGAGAGAGAGAGA
GAGAGCAAGCATGTGTTATTTGATGCTAAATCTGGAGATAGTTT
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