FC918078

Overview
NameFC918078
Unique NameFC918078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4895 contig Ccv1_Contig4895:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: Y319_MYXXA (Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.093e-21
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  363 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSN 761
            A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+RVL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +++  +R IP T N
Sbjct:   48 ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHRVLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGALMRLARRTIPSTPN 180          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: Y1219_RICCN (Uncharacterized membrane protein RC1219 OS=Rickettsia conorii GN=RC1219 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.451e-18
Identity = 47/143 (32.87%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  336 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 764
            S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++FK+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F       D+ +++I K+  + + +T N+
Sbjct:   29 SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHKTFDIQNSYIYKSIIKNLNITPNL 171          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: Y1252_RICFE (Uncharacterized membrane protein RF_1252 OS=Rickettsia felis GN=RF_1252 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 47/143 (32.87%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  336 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 764
            S+  SV    F    A  FG+   +  GA  A E++  +++E+++S+DN+FV  +IF++FK+P  YQ+RVL +GI G I+FR  +I  GT  + +F  +  + A IL+ +  K F       D+ +++I K+  + + +T N+
Sbjct:   29 SFKESVLFSLFYFVIACLFGIYFYYNTGAEHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPGKYQHRVLFFGIIGVIIFRAIMIYGGTILINKFAWLLYIFAVILIATGIKTFYVSHKTFDIQNSYIYKSIVKNLNITPNL 171          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: TERC_SERMA (Tellurium resistance protein terC OS=Serratia marcescens GN=terC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.216e-17
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  330 RESYTSSVKTVA----FCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD---NFIVKTCQRFIPV 752
            R+    S+K+ A    F V  A+AF   +    GA  AS F  GY LE+ LSVDNLFV + IF +F VP  Y++RVL +GI GAIVFR   + +GT+ L     V +V A I+ +++  +  S +DD ++ D   +   +  +RF P+
Sbjct:   32 RDDKPISLKSAALWSVFWVVVAMAFAGFLYIHHGAEVASLFVTGYALEKVLSVDNLFVMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPYVEVVFAIIVAWTAVMMLKSGDDDDEIEDYSQHLAYRMVKRFFPI 179          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: Y082_RICBR (Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0082 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 47/160 (29.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  336 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLT 815
            S+  S+    F  + +  FG+ + +  GA    E++  +++E+++S+DN+FV  +IF++FK+P  YQ+RVL +GI G I FR  +I  G   + +F  +  + A IL+ +  K F       D+ ++++ K+  +++ VT N L     +V+ ++ L++T
Sbjct:   29 SFKQSLLFSLFYFTISCLFGIYIYYNMGADSTREYYTCFLIEKAMSLDNIFVISIIFQFFKIPQKYQHRVLFFGIIGVIAFRAVMIYGGIILINKFSWLLYIFAVILIATGVKTFYVSHKTFDIQNSYLYKSIIKYLNVTPN-LEGDKFFVTRNKKLYVT 187          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: ALX_SHIFL (Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 44/130 (33.85%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  426 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLT 815
            +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +   H  +V  +  L+ T
Sbjct:   75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEH-FFVRKNGLLYAT 203          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: ALX_SALTY (Inner membrane protein alx OS=Salmonella typhimurium GN=alx PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 46/130 (35.38%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  426 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLT 815
            +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT  + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  +   H  +V  +  L+ T
Sbjct:   75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEH-FFVRKNGLLYAT 203          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: ALX_SALTI (Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 46/130 (35.38%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  426 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLT 815
            +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT  + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T  +   H  +V  +  L+ T
Sbjct:   75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEH-FFVRKNGLLYAT 203          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: ALX_PHOLL (Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii GN=alx PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  315 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNV 764
            R+ E   S+  +       VS ++ F LG        VG     S+   F  GY+LE++L+VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  +  +    LL +  K+   +EDD+ + D   V+  +  I +T N+
Sbjct:   30 RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKALAVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSWILYLFGLFLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNL 187          
BLAST of FC918078 vs. ExPASy Swiss-Prot
Match: ALX_ECOLI (Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.539e-17
Identity = 44/130 (33.85%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  426 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFLHLT 815
            +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+  + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T  +   H  +V  +  L+ T
Sbjct:   75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEH-FFVRKNGLLYAT 203          
The following BLAST results are available for this feature:
BLAST of FC918078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y319_MYXXA3.093e-2139.10Uncharacterized membrane protein STKORF319 OS=Myxo... [more]
Y1219_RICCN2.451e-1832.87Uncharacterized membrane protein RC1219 OS=Rickett... [more]
Y1252_RICFE3.201e-1832.87Uncharacterized membrane protein RF_1252 OS=Ricket... [more]
TERC_SERMA1.216e-1738.51Tellurium resistance protein terC OS=Serratia marc... [more]
Y082_RICBR1.589e-1729.38Uncharacterized membrane protein RBE_0082 OS=Ricke... [more]
ALX_SHIFL3.539e-1733.85Inner membrane protein alx OS=Shigella flexneri GN... [more]
ALX_SALTY3.539e-1735.38Inner membrane protein alx OS=Salmonella typhimuri... [more]
ALX_SALTI3.539e-1735.38Inner membrane protein alx OS=Salmonella typhi GN=... [more]
ALX_PHOLL3.539e-1732.28Inner membrane protein alx OS=Photorhabdus lumines... [more]
ALX_ECOLI3.539e-1733.85Inner membrane protein alx OS=Escherichia coli (st... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA42CG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918078 ID=FC918078; Name=FC918078; organism=Citrus clementina; type=EST; length=822bp
CCATGGGATTAGCTTCGGTCATTTACAGTGGCGTTCAAGCTCCTCACAAA
TTCGATTCTCTTCTGCTCCGGTTTTCGCCGACCTCGACCTCGCAAGTTCC
CAAATTAACCAGTCTTCTTCATTTCTGTAACTCCCAAGCTCCCACATTCT
ATTCAGTTAGTCATAACCGACGTGGCCAGTACTCGCCGTTACTTGCGTGT
GCCAAAGGAACTGAACAGGAGGATGATTTATCTACTTCAGTTGGGAGGAG
CAGTTCCCAGTCACATGAAAATGATAACACATCTCATTCTCCCACTACTG
TAGATGATGCAGAGAGGCAAATTGAGGGACGTGAATCTTACACATCATCT
GTTAAAACCGTTGCTTTCTGCGTGAGCACTGCAGTGGCATTTGGTCTTGG
CGTGGGTTTCATAGAAGGAGCTAGCAAGGCATCAGAATTTTTTGCTGGGT
ACATTTTGGAGCAAAGTTTGTCAGTGGACAATTTGTTTGTCTTTGTTCTG
ATATTCAAGTACTTCAAAGTACCAGTTATGTATCAGAATCGGGTGCTTTC
ATATGGTATTGCCGGTGCAATTGTCTTCCGTTTGTCATTGATATTACTTG
GAACAGCTACCCTCCAGAGGTTTGAGGCAGTTAATCTGGTCCTGGCTGGA
ATACTTCTATTCTCATCCTTCAAGCTATTTGCCAGTGAAGAGGATGACAC
TGATCTATCTGACAATTTTATAGTGAAGACATGCCAAAGATTTATTCCTG
TAACAAGTAATGTTTTGTGTACACATTCCCTTTATGTTTCTCTGTCTGAG
TTCTTACATTTGACTTCATGAA
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