FC918111

Overview
NameFC918111
Unique NameFC918111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length779
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918111_ssr686 microsatellite FC918111_ssr686:686..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6380 contig Ccv1_Contig6380:363..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACSF3_HUMAN (Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19
Identity = 66/210 (31.43%), Postives = 100/210 (47.62%), Query Frame = 2
Query:  164 DSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGA-----RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFLHCLPL 778
            D +A+      ++Y +L S +LR+S  +C                  L G  G      R+  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L  V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+ TH+ I A V  L     +T  D  LH LPL
Sbjct:   55 DRIALVDQHGRHTYRELYSRSLRLSQEICR-----------------LCGCVGGDLREERVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLSPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLSTHQNIRAVVTGLVHKWAWTKDDVILHVLPL 244          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACSF3_BOVIN (Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 62/205 (30.24%), Postives = 97/205 (47.32%), Query Frame = 2
Query:  164 DSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFLHCLPL 778
            D +A+      ++Y  L   +LR+S  +C   L+  ++    E           R+ ++      FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L  VA K G     + P+P         D  +   ++    +  A+I+YTSGTTG+PKGV+ TH  I A V  L     +T  D  LH LPL
Sbjct:   56 DRLALIDQHGRHTYKDLYLRSLRLSREICQ--LRACADGDLREE----------RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQKLGVP---LLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLSTHDNIRAVVTGLVHKWAWTKDDVILHVLPL 245          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACSF3_XENLA (Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.977e-18
Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  326 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFLHCLPL 778
            R+  +   +  +V      W SG IAVPL  S+P SEL +V+ DS  ++V++ E Y  VL  +A + G     +    N+   + +  + +  ++D    +  A+I+YTSGTTG+PKGV+ TH  + + V  L     +T  D  LH LPL
Sbjct:   98 RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVLSPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVLSTHYNLYSMVTALVNEWGWTKEDSILHVLPL 247          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACSF3_MOUSE (Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  326 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFLHCLPL 778
            R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L  +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG + TH+ +AA V  L  +  +T  D  LH LPL
Sbjct:   97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERLSPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGALSTHRNLAAVVTGLVHSWAWTKNDVILHVLPL 244          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACVS2_PENCH (N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase OS=Penicillium chrysogenum GN=PCBAB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 60/234 (25.64%), Postives = 95/234 (40.60%), Query Frame = 2
Query:    2 LGRERLLFSNNFEALFARRTTPFRFPQARFRSSFHSNSFMEVFKAAYKKRSMARDSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGI 703
            +G    L S   E L A   T   FP       F + +            S   D +A+  ++ S +Y +L   A R++  L        S+ + N N           I +V   S   +  +L  W SG   VP+   YP   + +++ D+    V++   Y   ++ +AA     +  + P  N  S+ +V + S        R  D A I+YTSGTTG+PKGV   H G+
Sbjct: 1390 VGSLEYLSSIQLEQLAAWNATEAEFPDTTLHEMFENEA------------SQKPDKIAVVYEETSLTYRELNERANRMAHQL-------RSDVSPNPNEV---------IALVMDKSEHMIVNILAVWKSGGAYVPIDPGYPNDRIQYILEDTQALAVIADSCYLPRIKGMAASGTLLYPSVLPA-NPDSKWSVSNPSPLS-----RSTDLAYIIYTSGTTGRPKGVTVEHHGV 1589          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACVS1_PENCH (N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase OS=Penicillium chrysogenum GN=PCBAB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 60/234 (25.64%), Postives = 95/234 (40.60%), Query Frame = 2
Query:    2 LGRERLLFSNNFEALFARRTTPFRFPQARFRSSFHSNSFMEVFKAAYKKRSMARDSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGI 703
            +G    L S   E L A   T   FP       F + +            S   D +A+  ++ S +Y +L   A R++  L        S+ + N N           I +V   S   +  +L  W SG   VP+   YP   + +++ D+    V++   Y   ++ +AA     +  + P  N  S+ +V + S        R  D A I+YTSGTTG+PKGV   H G+
Sbjct: 1358 VGSLEYLSSIQLEQLAAWNATEAEFPDTTLHEMFENEA------------SQKPDKIAVVYEETSLTYRELNERANRMAHQL-------RSDVSPNPNEV---------IALVMDKSEHMIVNILAVWKSGGAYVPIDPGYPNDRIQYILEDTQALAVIADSCYLPRIKGMAASGTLLYPSVLPA-NPDSKWSVSNPSPLS-----RSTDLAYIIYTSGTTGRPKGVTVEHHGV 1557          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: ACVS_EMENI (N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase OS=Emericella nidulans GN=acvA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 61/228 (26.75%), Postives = 97/228 (42.54%), Query Frame = 2
Query:   20 LFSNNFEALFARRTTPFRFPQARFRSSFHSNSFMEVFKAAYKKRSMARDSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGI 703
            L S     L A   T   FP     + F             K+ +   D VA+  +Q+S +Y QL   A R++  L        S+ +   NS          I +V   S   +A +L  W +G   VP+   YP+  + +++ D+    V+S   Y   +Q +A +S   +       ++S++T   + S +         D A I+YTSGTTGKPKGV+  H G+
Sbjct: 1390 LSSAQMAQLDAWNATDAEFPDTTLHAMFE------------KEAAQKPDKVAVVYEQRSLTYRQLNERANRMAHQL-------KSDISPKPNSI---------IALVVDKSEHMIATILAVWKTGGAYVPIDPEYPDDRIRYILEDTSAIAVISDACYLSRIQELAGESVRLYR-----SDISTQTDG-NWSVSNPAPSSTSTDLAYIIYTSGTTGKPKGVMVEHHGV 1583          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: PPSB_BACSU (Plipastatin synthase subunit B OS=Bacillus subtilis GN=ppsB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 55/201 (27.36%), Postives = 85/201 (42.29%), Query Frame = 2
Query:  164 DSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFLH 766
            ++ A++   + ++Y QL   A +I+  L    +                 G G  + ++   S E  A +LG W +G   +PL   +P   L  ++ DS  + +L  ED                SLIPP    ++ T    +S   +       D A ++YTSGTTG+PKGV+  H GIA  +Q   E    T  D  LH
Sbjct:  484 EAAALKMGNECWTYRQLQVRANQIAHALIEKGV-----------------GSGDIVAVMMGRSMEMPAALLGIWKAGGAYMPLDPHFPAERLSFLLKDSQAAQLLIEEDL--------------ISLIPPSYEGNTITIEHTESYQTEAPNMPPGDLAYLIYTSGTTGRPKGVLVDHHGIANTLQWRREEYSMTEQDISLH 653          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: TYCA_BREPA (Tyrocidine synthase 1 OS=Brevibacillus parabrevis GN=tycA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 49/187 (26.20%), Postives = 81/187 (43.32%), Query Frame = 2
Query:  164 DSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDP------ALIVYTSGTTGKPKGVVHTHKGIA 706
            D VAI  + +  SY +L   A +++  L    ++T S                  +G++ + S E V  +L    +G   VP+ + YP   + +++ DS   +VL+ +   +++  V                 S E  V D+ Q +  +      P      A ++YTSGTTGKPKG +  HKGIA
Sbjct:   42 DRVAIVFENRRLSYQELNRKANQLARALLEKGVQTDSI-----------------VGVMMEKSIENVIAILAVLKAGGAYVPIDIEYPRDRIQYILQDSQTKIVLTQKSVSQLVHDVG---------------YSGEVVVLDEEQLDARETANLHQPSKPTDLAYVIYTSGTTGKPKGTMLEHKGIA 196          
BLAST of FC918111 vs. ExPASy Swiss-Prot
Match: PKSN_BACSU (Polyketide synthase pksN OS=Bacillus subtilis GN=pksN PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 55/214 (25.70%), Postives = 98/214 (45.79%), Query Frame = 2
Query:  122 EVFKAAYKKRSMARDSVAIRADQKSYSYDQLVSSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQSVAAKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKGIAAQVQMLTEA*EYTSADQFL 763
            EVF+   +K     D+VA+  + +S +Y ++              D K+TS     ++  V        +GI A+ SF+ + G+LG   +G   VPL  S+P+  L +++ DS  S+VL+  +  + +  +        ++      ++      DQ  +      + E  A I+YTSG+TG+PKGV+  H+ I   +  L      T+ D +L
Sbjct:  470 EVFE---EKAKQTPDAVAVMFEDRSLTYKEV--------------DEKSTSVAVYLQHQGVRPE---QPVGICAERSFDMIIGILGILKAGGAYVPLDPSFPQERLKYMLKDSQASIVLTQPNVHDRISGLTGSHVKAINI-----ELACRNGYTDQQSSGLKREVKPEHLAYIIYTSGSTGEPKGVMVEHRSIMNTLNFLESHYPVTAEDAYL 658          
The following BLAST results are available for this feature:
BLAST of FC918111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ACSF3_HUMAN3.446e-1931.43Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_BOVIN2.918e-1830.24Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_XENLA4.977e-1833.77Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_MOUSE1.448e-1735.76Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACVS2_PENCH3.124e-1225.64N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valin... [more]
ACVS1_PENCH3.124e-1225.64N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valin... [more]
ACVS_EMENI4.081e-1226.75N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valin... [more]
PPSB_BACSU6.960e-1227.36Plipastatin synthase subunit B OS=Bacillus subtili... [more]
TYCA_BREPA1.187e-1126.20Tyrocidine synthase 1 OS=Brevibacillus parabrevis ... [more]
PKSN_BACSU1.187e-1125.70Polyketide synthase pksN OS=Bacillus subtilis GN=p... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918111 ID=FC918111; Name=FC918111; organism=Citrus clementina; type=EST; length=779bp
TTTGGGCCGGGAACGTCTCTTATTTTCTAACAATTTCGAAGCTCTTTTCG
CCAGGAGAACGACCCCGTTTCGGTTCCCACAAGCTCGCTTTCGCTCCTCT
TTTCATTCTAATTCATTTATGGAGGTCTTCAAAGCTGCATACAAAAAGCG
TTCTATGGCTCGTGACAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACA
GTTATGATCAACTTGTGTCATCTGCATTAAGAATATCTAGTCTCTTGTGC
AGTAATGACCTTAAAACTACTAGTGAAAAGACCAAAAATGAGAATTCAGC
TGTGCTAGCTGGAGGATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTT
CATTTGAGTTTGTTGCAGGAGTACTTGGGACTTGGTTCAGCGGATGTATT
GCAGTTCCACTTGCACTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGAT
GCATGATTCAGATATATCCATGGTTCTAAGCACTGAAGATTATCGTGAGG
TCTTGCAAAGCGTTGCTGCTAAGAGTGGTGCTAAATTTTCTCTAATTCCC
CCTGTTCCCAACGTATCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGC
TGAAAAAATGGACGGACAACGAGGTGAGGATCCAGCGTTAATAGTGTACA
CGAGTGGGACAACTGGGAAGCCTAAAGGAGTTGTCCACACACACAAAGGC
ATTGCTGCACAGGTTCAAATGTTAACCGAGGCTTGAGAATATACATCAGC
TGATCAATTTTTGCATTGTTTACCACTAC
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