FC918114

Overview
NameFC918114
Unique NameFC918114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13037 contig Ccv1_Contig13037:189..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC918114 vs. ExPASy Swiss-Prot
Match: AFMID_MOUSE (Probable arylformamidase OS=Mus musculus GN=Afmid PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 2 
Query:  371 VVYGDQPRNRLDLHFPTNNDGPKPVVVFVTGGAWIIGYKAWGSLLGRQLAERDIIVACLDYRNFPQGTISDMVKDVSQGISFVFNNIADYGGDPNRIYLMGQSAGAHISSCALLEQAVKESTGESISWSTSHIKYYFCLSGGYNFLNLV 817
            V YGD    +LD++FP  +    P+ +F+ GG W  G K   + +   L  + I+V  + Y   P+GT+  MV  V++ + F+        G    IYL G SAGAH+++  LL +  K          T +++ +  +SG Y+   L+
Sbjct:   64 VPYGDGEGEKLDIYFPDEDSKAFPLFLFLHGGYWQSGSKDDSAFMVNPLTAQGIVVVIVAYDIAPKGTLDQMVDQVTRSVVFLQRRYPSNEG----IYLCGHSAGAHLAAMVLLARWTKHGV-------TPNLQGFLLVSGIYDLEPLI 201
[Close]
BLAST of FC918114 vs. ExPASy Swiss-Prot
Match: AFMID_HUMAN (Probable arylformamidase OS=Homo sapiens GN=AFMID PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 43/149 (28.86%), Postives = 71/149 (47.65%), Query Frame = 2 
Query:  371 VVYGDQPRNRLDLHFPTNNDGPKPVVVFVTGGAWIIGYKAWGSLLGRQLAERDIIVACLDYRNFPQGTISDMVKDVSQGISFVFNNIADYGGDPNRIYLMGQSAGAHISSCALLEQAVKESTGESISWSTSHIKYYFCLSGGYNFLNLV 817
            V YGD    ++D++FP  +    P  +F  GG W  G K   + +   L  + + V  + Y   P+GT+  MV  V++ ++FV        G    IYL G SAGAH+++  LL    K          T +++ +F +SG ++   +V
Sbjct:   66 VPYGDGEGEKVDIYFPDESSEALPFFLFFHGGYWQSGSKDESAFMVHPLTAQGVAVVIVAYGIAPKGTLDHMVDQVTRSVAFVQKRYPSNKG----IYLCGHSAGAHLAAMMLLADWTKHGV-------TPNLRGFFLVSGVFDLEPIV 203
The following BLAST results are available for this feature:
BLAST of FC918114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AFMID_MOUSE1.029e-1129.53Probable arylformamidase OS=Mus musculus GN=Afmid ... [more]
AFMID_HUMAN2.994e-1128.86Probable arylformamidase OS=Homo sapiens GN=AFMID ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA88DG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918114 ID=FC918114; Name=FC918114; organism=Citrus clementina; type=EST; length=837bp
TTTCGTTAAGGTGGTAGTGGAAAAATAGACAATTAAAATTATGAATGACG
ATATGGAGACCGAACCGATGGTGTCGTTTGGTCCCTCTAGTAATTATGTG
GGAAGCAACAATCAGCAGAGGCGCCGGAGACCCGCCGGAAGCAAGCCGGA
GAAGCCACGACGGCAGAATTCGTTTAGCCGAGATATTGGGCACGCTGCCG
CTGAGACTTATCTTATCACCAGGCTAACCTTCACTCTTCTTCGATATCTT
GGGTTAGGCTATCGGTGGATCTCAAGATTGGTTGCTCTCGGTTGTTATGC
TATGTTACTTCTGCCCGGCTTTCTCCAAGTTGCCTATTATTATTTTTTCT
CGAGCCAAGTCAGGCGGAGTGTTGTTTATGGAGATCAACCCAGAAATAGG
TTGGACCTACATTTTCCCACAAATAATGATGGACCGAAGCCAGTTGTGGT
GTTTGTAACTGGTGGAGCCTGGATTATTGGGTACAAAGCGTGGGGTTCTC
TTCTAGGAAGGCAATTGGCGGAAAGAGACATTATAGTTGCATGCCTTGAT
TATAGAAATTTTCCCCAGGGAACTATCAGTGACATGGTGAAAGACGTTTC
TCAGGGCATCTCGTTTGTCTTCAACAACATTGCTGATTATGGAGGTGATC
CTAACAGGATTTATCTAATGGGGCAATCAGCTGGTGCACATATTTCTTCT
TGTGCTCTCTTGGAGCAAGCAGTCAAAGAATCTACAGGAGAGAGCATCTC
GTGGAGCACTTCCCATATAAAATATTATTTTTGTTTATCTGGAGGGTACA
ATTTTCTTAATTTAGTAGATCATTGGCCCCAACCGTG
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