FC918175

Overview
NameFC918175
Unique NameFC918175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918175_ssr853 microsatellite FC918175_ssr853:853..862. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12722 contig Ccv1_Contig12722:52..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_PONAB (UPF0549 protein C20orf43 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.580e-29
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++ VL+ RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_HUMAN (UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.580e-29
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++ VL+ RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_MACFA (UPF0549 protein C20orf43 homolog OS=Macaca fascicularis GN=QccE-12445 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.064e-29
Identity = 72/176 (40.91%), Postives = 105/176 (59.66%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG  E++ VL+ RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_RAT (UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.598e-29
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++ +L+ RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKATSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_BOVIN (UPF0549 protein C20orf43 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.843e-29
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++ VL+ R+EE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRIEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_PIG (UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 70/176 (39.77%), Postives = 107/176 (60.80%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++++L+ RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKAASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_MOUSE (UPF0549 protein C20orf43 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 69/176 (39.20%), Postives = 107/176 (60.80%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            KK +K+D + + +++W  C LS E LR P V  +LG ++NK+A++  LL K+    L K  S+I+ +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NG +E++ +L++RMEE +L+ K
Sbjct:   19 KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRMEERRLRAK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: CT043_CHICK (UPF0549 protein C20orf43 homolog OS=Gallus gallus GN=RCJMB04_16p11 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.640e-28
Identity = 69/176 (39.20%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  407 KKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQ----YSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            +K  K+D   + +++W  C LS E L  P V  +LG ++NK+A++  LL K+  K      S+IK LK++  + L+  P   G +E+  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I+ NGN+E++ VL++RME+ +LK K
Sbjct:   19 RKAVKVDKTAELVARWYYCTLSQEKLCRPIVACELGRLYNKDAVIEFLLDKSADKTPMEAASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRMEDRRLKSK 194          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: U549_DICDI (UPF0549 protein OS=Dictyostelium discoideum GN=DDB_G0288549 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.902e-20
Identity = 60/196 (30.61%), Postives = 98/196 (50.00%), Query Frame = 2
Query:  383 CYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNL--PKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVKSS-----------------------SCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVKE 892
            C L    +K+    D ++    KW  CAL+ + L EP V+D LG +FNK+ ++ ALL+ +L   K +S+I+ L+ +  V  S  P  E++     + CPIT +E  +  Y+F  ++TCGHV S KA KE+K+                        SC +C +E+   D I  N + EE   ++  ++E+    K+
Sbjct:   12 CELVKTKKKEVKVFDKDQVDFGKWFLCALAQDTLSEPIVLDDLGNLFNKDNIIEALLNGSLETSKNFSHIRSLRSIYTVNFSPNPAHEKDSTVSPWLCPITKIEVGSSNYKFKFLKTCGHVFSEKAFKELKNDDSNNNNNNNNNNKKEIDSSKDNLSCFLCSKEYITNDLITINPSGEEFEQMKVTLQEKLANSKK 207          
BLAST of FC918175 vs. ExPASy Swiss-Prot
Match: YAT9_SCHPO (UPF0549 protein C1D4.09c OS=Schizosaccharomyces pombe GN=SPAC1D4.09c PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.887e-17
Identity = 51/168 (30.36%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  407 KKPDKIDP------NEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILNNGNEEEISVLRERMEEEKLKVK 889
            K+P K+ P         + S++  CA+++EPL  P V   LG ++NK +++  LL ++ +PK  S+IK LKD++ +++       ++   + + CPIT    +  Y+F  +  CGHV    ALK+     C  C++ + E D I  N N E++  L +R+ +  L  K
Sbjct:   16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSVPKSPSHIKSLKDVVQLQVEL-----DDSGKVLWLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLSKRLLDLALSEK 178          
The following BLAST results are available for this feature:
BLAST of FC918175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CT043_PONAB1.580e-2940.91UPF0549 protein C20orf43 homolog OS=Pongo abelii P... [more]
CT043_HUMAN1.580e-2940.91UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf... [more]
CT043_MACFA2.064e-2940.91UPF0549 protein C20orf43 homolog OS=Macaca fascicu... [more]
CT043_RAT4.598e-2939.77UPF0549 protein C20orf43 homolog OS=Rattus norvegi... [more]
CT043_BOVIN7.843e-2939.77UPF0549 protein C20orf43 homolog OS=Bos taurus PE=... [more]
CT043_PIG1.024e-2839.77UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=... [more]
CT043_MOUSE1.024e-2839.20UPF0549 protein C20orf43 homolog OS=Mus musculus P... [more]
CT043_CHICK6.640e-2839.20UPF0549 protein C20orf43 homolog OS=Gallus gallus ... [more]
U549_DICDI3.902e-2030.61UPF0549 protein OS=Dictyostelium discoideum GN=DDB... [more]
YAT9_SCHPO6.887e-1730.36UPF0549 protein C1D4.09c OS=Schizosaccharomyces po... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DE08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918175 ID=FC918175; Name=FC918175; organism=Citrus clementina; type=EST; length=892bp
CGTCTTCATATCTTAAAGTCTTAAATTTCCTCGGAAGGATTAATATTCCC
TCAAATTTTAAGCCGATCTATTCTAAATTCAACAATCCCAAAACAGAATG
CGTTCCAAAACCCAAATTTTCATCAAATCCCCATCAAATTCTCTGAAAAC
CCTAACCGTAGGCGCAAACCAATTCGAAACGCTAAACCACCTCAAACGCT
CTCTCCTTTCACTGGACCAGTCTCTCTCGTCTCTTTATTTCACTCTCAAT
GGAAAAATCCTCGACGAGTCGACCCCGCTTTTCAAAAATCCCCAAATTGC
CCCTCTTTCTACCCTGTATTTACGCCAGCGAGTTTTTGGTGGCGGTGGAG
ATGGCGGCGCCACCGGAGCTGAGTCACGAGATTGTTATCTCAACATGTAT
GCGGAGAAAAAACCAGATAAAATCGACCCAAATGAGCAAAGGCTCTCGAA
ATGGTGTAACTGCGCGTTATCGAATGAGCCGTTGAGGGAACCATGCGTTA
TCGATAAATTAGGTACCATCTTTAATAAAGAAGCGCTTGTTCATGCTTTG
TTGAGTAAGAATTTGCCTAAGCAGTATAGTTATATAAAGGGTTTGAAGGA
TTTGATCAATGTGAAGCTTTCGAGGGTCCCTGGAGCAGAAGAGAATGGTG
ATGGTATTAGGTTTCAGTGCCCGATAACAGGACTAGAGTTTAATGGGAAG
TATAGGTTTGTAGCAATGAGAACTTGTGGGCATGTGTTGAGTACTAAAGC
ACTGAAAGAGGTGAAATCATCCTCATGTTTGGTTTGCCATGAGGAGTTTG
GGGAAATGGATAAGATTCTGAATAATGGGAATGAAGAAGAGATCTCGGTG
TTGAGAGAGAGAATGGAAGAAGAGAAGTTGAAAGTTAAGGAA
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