FC918193

Overview
NameFC918193
Unique NameFC918193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length834
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918193_ssr81 microsatellite FC918193_ssr81:81..104. BLAST: Citrus ESTs to Prunus persica proteins V1
FC918193_ssr135 microsatellite FC918193_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12025 contig Ccv1_Contig12025:2..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.954e-88
Identity = 165/215 (76.74%), Postives = 187/215 (86.98%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASP--DHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTIN 834
            MNDLFS SFSRFRS + SP  D       +QM     STGGVNLDKFF+DVESVK+ELKEL+RL+ +L + HE+SKTLHNAKAVKDLRS+MD DV  ALK AK+IK++LEALDR+NAANRSLPGCGPGSSSDRTRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRRY+TVTGENPDE+TLDRLISTGESE FLQKAIQEQG+GR+LDTIN
Sbjct:    1 MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTIN 215          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.196e-68
Identity = 137/214 (64.02%), Postives = 169/214 (78.97%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNST-GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTIN 834
            MNDL SGSF    ++ +SP H H+    +   +  S  GG NLD FF DVE V ++LKEL+RL ++L++S+E+SKTLHNA AVK+L+ +MDADV+AALK A+ +K  LEALDR+N  NRSLP  GPGSSSDR RTSVVNGLRKKLKD ME F+ +R+ I++EY++TV R  +TVTGE PDE TL+RLISTGESETFLQKAIQEQG+GRILDTIN
Sbjct:    1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTIN 214          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.581e-63
Identity = 121/213 (56.81%), Postives = 165/213 (77.46%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTIN 834
            MNDLFS SF ++   +            QM +  +    +NLDKFF+DVE+VKD +K +E L+ SLQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++ GCGPGSS+DRTRTSVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T++ LIS+GESE FLQKAIQEQG+G+ILDTI+
Sbjct:    1 MNDLFSSSFKKYTDLKQQA---------QMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTIS 204          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.185e-62
Identity = 119/213 (55.87%), Postives = 165/213 (77.46%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTIN 834
            MNDLFS SF + ++              Q+ +       +NLDKFF+DVE+VKD++K +E L+  LQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++PGCGPGSS+DRTR+SVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T+D LI++GESE FLQKAIQEQG+G+ILDTI+
Sbjct:    1 MNDLFSNSFKKNQA--------------QLGDVEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTIS 199          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.325e-59
Identity = 114/214 (53.27%), Postives = 162/214 (75.70%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPN-STGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTIN 834
            MNDL S SF R+          +H   +   E+ N S    NLD+FF  VESVK+++K ++ +H  LQ ++E+SKT+H++KAVK LR+RMD+ V+  LK  K+IK +L AL++SNAA R + GCGPGSS+DRTRTSVV+GL KKLKD M+ F  LR ++++EY++TV+RRY+TVTG+  DE+T+++LIS+GESE FLQKAIQEQG+G+++DT++
Sbjct:    1 MNDLISSSFKRYTDL-------NHQVQLDDIESQNVSLDSGNLDEFFGYVESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLS 207          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.573e-44
Identity = 91/214 (42.52%), Postives = 136/214 (63.55%), Query Frame = 1
Query:  196 MNDLFSGS--FSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTI 831
            MNDL  GS  FSR RS ++  +  H          P ++G + L  FF  V+ ++ + ++L++  N LQ +HE++K +  A A+K ++ RM+ DV    + ++ IK ++E LDR N  NR+ PGCG G+  DRTRT+    ++KK KD +  F  LRQ I  EYR+ V+RR +TVTG+  DE+ +DRLI TG+SE   QKAI+EQG+G+I+DT+
Sbjct:    1 MNDLLKGSLEFSRDRSNRSDIESGH---------GPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTL 205          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.739e-43
Identity = 95/212 (44.81%), Postives = 126/212 (59.43%), Query Frame = 1
Query:  196 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGKGRILDTI 831
            MNDL  GSF   R + +          +++ E      G  L+ FF  V+ +  +  +L++L   LQ SHE+SK++  A A+K ++  M+ DV      A+ IK +LE LDR N ANR  PGC  GS  DR+RT+    L+KKLKD M  F  LR+ I  EYRD V RR YTVTGE  DE T+D LI TG SE   QKAIQEQG+G+++DT+
Sbjct:    1 MNDLLKGSFELPRGQSS------REGDVELGEQQGGDQG--LEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTL 204          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.323e-34
Identity = 81/221 (36.65%), Postives = 133/221 (60.18%), Query Frame = 1
Query:  196 MNDLFSGSFSRF--------RSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLIS-TGESETFLQKAIQEQGKGRILDTI 831
            MNDL + SF  +        +  +A PD       ++M          NL  F ++ E VK E+  +      ++  HE+SK +H A++VK LR+++  ++ + L+ AK IK +LE +D++N   + L G    +   R+RT+V NGLRKKLK+ M  F  LRQ++ SEY++TV+RRY+TVTGE+ +++ ++++I+     E FL +AIQE GKG++L+T+
Sbjct:    1 MNDLMTKSFMSYVDLKKAAMKDMEAGPDFD-----LEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRLSG----TPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETV 212          
BLAST of FC918193 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.598e-28
Identity = 60/161 (37.27%), Postives = 104/161 (64.60%), Query Frame = 1
Query:  316 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQ 798
            NL  FF ++E++K  ++E+  L   LQ  +E++K+ H+ K ++ LR RM++++    + A  +K  +E L++ N ANR+      GS  DRTRTS+ NG+RKKL+D+M  F+ LR+RI ++YR+ ++R+Y+  TGE P  + ++++IS   S + L K  +
Sbjct:   46 NLSGFFQEIETIKTLIEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRT--SFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFE 204          
The following BLAST results are available for this feature:
BLAST of FC918193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SY121_ARATH3.954e-8876.74Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH1.196e-6864.02Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH2.581e-6356.81Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH2.185e-6255.87Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH1.325e-5953.27Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY131_ARATH1.573e-4442.52Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY132_ARATH1.739e-4344.81Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY111_ARATH7.323e-3436.65Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
SY112_ARATH4.598e-2837.27Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA29CD01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918193 ID=FC918193; Name=FC918193; organism=Citrus clementina; type=EST; length=834bp
CCAAAATCACCCTCATCGCCTTCAAAAGCCGTCCGCTCCATCAGCCTCAT
TCTTTCTATCATTCTTTCTAAAACTGCTAATCTTCTTCTTCTTCTTCTTC
TTCTGCATTTCGAGATTATTTCCGTATTGGTGAATTATTTATTTATTAGA
ATATAATTATTCTCTGATATTCGCCCCAAAAAACAAAAAACAAAAATGAA
CGACCTATTCTCCGGATCCTTCTCTCGCTTCCGCAGCGAGCAAGCTTCTC
CCGATCACCCGCACCACCACACGACGATCCAGATGACGGAGAACCCGAAC
TCCACCGGCGGAGTCAACCTCGACAAGTTCTTCGACGACGTCGAATCGGT
CAAGGACGAGCTCAAGGAGCTCGAAAGGCTACACAACAGCCTCCAGACGT
CTCATGAGAAGAGCAAGACCTTACACAACGCGAAAGCCGTGAAAGACCTG
CGCTCCCGAATGGACGCTGACGTCAGCGCCGCGTTGAAGAATGCCAAGTT
GATCAAGATCCGCCTGGAGGCGCTGGACCGGTCCAACGCCGCGAATCGGA
GCCTCCCCGGCTGCGGACCGGGATCTTCCTCGGACCGGACCAGGACCTCC
GTGGTCAACGGGCTGAGGAAGAAGCTGAAGGACTCGATGGAGAGTTTTAA
CGAGTTGAGGCAGAGGATTTCGTCCGAGTATAGGGACACCGTTCAGAGGA
GGTACTATACGGTCACCGGAGAGAATCCCGACGAGAAGACTTTAGATCGC
TTGATTTCTACTGGAGAGAGTGAAACATTCTTGCAGAAAGCAATTCAGGA
GCAAGGAAAGGGAAGAATTTTGGACACCATAAAT
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