FC918216

Overview
NameFC918216
Unique NameFC918216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918216_ssr12 microsatellite FC918216_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11531 contig Ccv1_Contig11531:65..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL6_MOUSE (Oxysterol-binding protein-related protein 6 OS=Mus musculus GN=Osbpl6 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35
Identity = 77/183 (42.08%), Postives = 117/183 (63.93%), Query Frame = 3
Query:  291 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   VTL + G         T +HN++ GR WI+  G++ +
Sbjct:  595 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVTLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTL 776          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL6_HUMAN (Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.247e-34
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 3
Query:  291 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   V L + G         T +HN++ GR WI+  G++ +
Sbjct:  570 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVMLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTI 751          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL3_HUMAN (Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.241e-34
Identity = 75/181 (41.44%), Postives = 116/181 (64.09%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A +   P  R+VY +++A+S Y +  YR   KPFNPVLGET+E +    G  F +EQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++V+
Sbjct:  529 WNILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLERMVYVAAFAISAYASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPVFGDHFEWNKVTSCIHNILSGQRWIEHYGEIVI 708          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL7_HUMAN (Oxysterol-binding protein-related protein 7 OS=Homo sapiens GN=OSBPL7 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.233e-34
Identity = 77/181 (42.54%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            W +++  IG D+ S V++PV ++EP + LQR+ E +EYS LLD A    DP  R+VY +++A+S Y +  +R   KPFNPVLGET+E      G  FI+EQVSHHPP+SA HAE+E+F +    K + KF G S+++ PVG   V+L R G   +     + +HN++ G+ WI+  G++++
Sbjct:  480 WNILRNNIGKDL-SKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKVTSCIHNVLSGQRWIEHYGEVLI 659          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL3_MOUSE (Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.105e-33
Identity = 74/179 (41.34%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDM 824
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A     P  R+VY +++A+S Y +  +R   KPFNPVLGET+E +    G  F AEQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++
Sbjct:  497 WSILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESGNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPAFGDHFEWNKVTSCIHNILSGQRWIEHYGEI 674          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSB11_DICDI (Oxysterol-binding protein 11 OS=Dictyostelium discoideum GN=osbK PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.184e-32
Identity = 69/185 (37.30%), Postives = 107/185 (57.84%), Query Frame = 3
Query:  279 EERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            E++ + WK +   +G D  SLV+LPV+  EP +VL+   E + +  L++ A  C D   RL+Y +++ ++++ +Y R  KPFNP+LGETFE ++  G      EQVSHHPP+      +E F     S + TKF GNS+DV+  G+  + L   G       P    HN+IFG+ WI+  GD+++
Sbjct:   88 EDKKSLWKKVGGLVGKDPMSLVSLPVYFFEPLTVLECQLEPLRFVELIEKASTCSDSIDRLMYLTAFNIAVFSSYTRTAKPFNPLLGETFEYIDKQGRYKSFCEQVSHHPPIGIAQTTSEIFDLQQESWITTKFWGNSLDVFSHGQNHLYLNSTGEHFTWKVPSAICHNIIFGKMWIEHYGDLIV 272          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.360e-31
Identity = 79/218 (36.24%), Postives = 122/218 (55.96%), Query Frame = 3
Query:  183 NGLLGY-EGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVM 830
            +G L Y +GL   N     E++ D   +G  + E+R    K +  Y+G D+ SL++LPV+I EP S LQ M+E ++Y+ LL  A + +  ++ L Y +++  ++Y    R  KPFNP+LGETFE+V+  G   F+AEQVSHHPP+      +E +   + + L++KF GNS +V   G      K+           T  HN+I G  W+D  GD+V+
Sbjct:    3 SGALNYMKGLVGTNENLQVEESGDN--KGDIEPEQRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCLAYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCHNIIIGSLWLDHYGDLVI 218          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: YB35_SCHPO (Oxysterol-binding protein homolog C2F12.05c OS=Schizosaccharomyces pombe GN=SPBC2F12.05c PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.195e-28
Identity = 72/181 (39.78%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLV---PPPTKVHNLIFGRTWIDSPGDM 824
            W +++  IG D+  + TLPV  +EP S+LQR+AE MEY+ LLD A   +DPY R++Y +++A S Y +   R  KPFNP+LGET+E  +   G  FI EQVSHHPP+ A ++E+ ++ Y   S +++KF G S D+ P+G   + L+     ++L       + V  +I G   +D+ G M
Sbjct:  939 WGILKGMIGKDMTKM-TLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYASTLNRVAKPFNPLLGETYEFCHPQRGFRFIVEQVSHHPPVGAAYSESANWKYYGESSVKSKFYGKSFDISPLGTWFLELRHPSGEVELYTWKKVTSSVVGIILGSPSVDNYGQM 1118          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL1_HUMAN (Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.038e-28
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDM 824
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNV 728          
BLAST of FC918216 vs. ExPASy Swiss-Prot
Match: OSBL1_RAT (Oxysterol-binding protein-related protein 1 OS=Rattus norvegicus GN=Osbpl1a PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 3
Query:  297 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDM 824
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSFSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNV 728          
The following BLAST results are available for this feature:
BLAST of FC918216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSBL6_MOUSE5.009e-3542.08Oxysterol-binding protein-related protein 6 OS=Mus... [more]
OSBL6_HUMAN3.247e-3441.53Oxysterol-binding protein-related protein 6 OS=Hom... [more]
OSBL3_HUMAN4.241e-3441.44Oxysterol-binding protein-related protein 3 OS=Hom... [more]
OSBL7_HUMAN7.233e-3442.54Oxysterol-binding protein-related protein 7 OS=Hom... [more]
OSBL3_MOUSE2.105e-3341.34Oxysterol-binding protein-related protein 3 OS=Mus... [more]
OSB11_DICDI5.184e-3237.30Oxysterol-binding protein 11 OS=Dictyostelium disc... [more]
OSB8_DICDI3.360e-3136.24Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]
YB35_SCHPO1.195e-2839.78Oxysterol-binding protein homolog C2F12.05c OS=Sch... [more]
OSBL1_HUMAN2.038e-2838.89Oxysterol-binding protein-related protein 1 OS=Hom... [more]
OSBL1_RAT2.662e-2838.89Oxysterol-binding protein-related protein 1 OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918216 ID=FC918216; Name=FC918216; organism=Citrus clementina; type=EST; length=831bp
CGATTAAAACGTCTCTCTCTCTATTCTCTCTAAGCTACGTATTCATTCGA
TAGCTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGA
TGGATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGT
CGACTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTAT
GAAGGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGA
TGAAGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGA
AGATGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTT
CCTGTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTT
GATGGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCAT
ACATGAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCC
TATCGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGA
AATGGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATC
ACCCCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGAT
GTGACTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTA
TCCAGTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCG
ATTTGGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACT
TGGATTGATTCACCGGGGGATATGGTCATGA
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