FC918218

Overview
NameFC918218
Unique NameFC918218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12849 contig Ccv1_Contig12849:15..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918218 vs. ExPASy Swiss-Prot
Match: OGG1_HUMAN (N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  214 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFPSLERLS 693
            W  +   +SEL L L  P+GQ+FRW++  P  ++G +   + +L   +    C       S+     P    A+  +  + ++L +L+  + + D  F E+A+   G R+LRQDP+ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FPSL+ L+
Sbjct:   23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALA 188          
BLAST of FC918218 vs. ExPASy Swiss-Prot
Match: OGG1_MOUSE (N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  214 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFPSLERLS 693
            W  +   +SEL L L   +GQ+FRWK+  P  ++G +   + +L   ++   C       S+ +  +      L  +  + +SL +L+  +++ D  F  +A+   G R+LRQDP ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FP+L  L+
Sbjct:   23 WASIPCPRSELRLDLVLASGQSFRWKEQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPNLHALA 188          
BLAST of FC918218 vs. ExPASy Swiss-Prot
Match: OGG1_RAT (N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  214 WTPLNLTQSELSLPLTFPTGQTFRWKQTGPLQYTGPVGPHLISLKHLQNGDVCYHIHTSPSEPAAKS-----ALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGKVEGFEFHEFPSLERLS 693
            W  +   +SEL L L   +GQ+FRW++  P  ++G +   + +L   ++   C        +    +      L  +  + +SL +L+  +++ D  F  +A+   G R+LRQDP ECL  F+CSSNNNIARIT MV+ L  + G  L +++   +H FP+L  L+
Sbjct:   23 WASIPCPRSELRLDLVLASGQSFRWREQSPAHWSGVLADQVWTLTQTEDQLYCTVYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASVDSHFQSVAQKFQGVRLLRQDPTECLFSFICSSNNNIARITGMVERLCQAFGPRLVQLDDVTYHGFPNLHALA 188          
BLAST of FC918218 vs. ExPASy Swiss-Prot
Match: OGG1_YEAST (N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae GN=OGG1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 57/181 (31.49%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  211 KWTPLNLTQSELSLPLTFPTGQTFRW---KQTGPLQYTGPVGPH----LISLKHLQNGDVCYHIHTSP--SEPAAKSALLDFLNMGISLGELWEG-FSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGKVEGFEFHEFPSLERL-SLFSEVELR 717
            K+  L + +SEL L      GQ+FRW   ++      T  +G      ++ L+  +  ++   +      ++ A K+ L+ +  + +SL  L++  +  SD  FA+L+    G R+L Q+P E L+ F+CSSNNNI+RIT+M + L S  G+ +  ++G  +H FP+ E L S  +E +LR
Sbjct:    4 KFGKLAINKSELCLANVLQAGQSFRWIWDEKLNQYSTTMKIGQQEKYSVVILRQDEENEILEFVAVGDCGNQDALKTHLMKYFRLDVSLKHLFDNVWIPSDKAFAKLSPQ--GIRILAQEPWETLISFICSSNNNISRITRMCNSLCSNFGNLITTIDGVAYHSFPTSEELTSRATEAKLR 182          
The following BLAST results are available for this feature:
BLAST of FC918218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
OGG1_HUMAN7.021e-2434.94N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE... [more]
OGG1_MOUSE6.571e-2233.73N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE... [more]
OGG1_RAT7.265e-2132.53N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Og... [more]
OGG1_YEAST5.957e-1531.49N-glycosylase/DNA lyase OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA29CD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918218 ID=FC918218; Name=FC918218; organism=Citrus clementina; type=EST; length=725bp
AAAAACACAAAATCGGCCATCTCTCCCGTCCCCCACTCTCCATGTCCATG
CGGGAGGGGGGAGGACTGAAAAAGAGAAGAATCAGGGACCCAATAATTGA
TCATGCAGTCACTGAAGAACTCCCCCTCCCCACTGAAAAGGCCAAGACTC
ACGCCGCAGCCGCCGCCAACTCCACCAAACCCGCAGACTCTCACCACCAA
TAAACCCTCAAAATGGACCCCACTCAACCTCACCCAATCAGAGCTCTCAC
TACCCCTCACCTTCCCGACCGGCCAAACCTTCCGCTGGAAACAAACGGGT
CCTCTCCAATACACCGGCCCCGTTGGGCCCCATCTCATCTCCCTCAAGCA
CCTCCAAAACGGCGACGTTTGCTACCACATCCACACTTCCCCCTCAGAAC
CCGCCGCCAAATCGGCTCTCCTGGATTTTCTTAACATGGGTATTTCCCTG
GGTGAGCTCTGGGAGGGATTTTCGGCTTCTGATTGCCGTTTTGCTGAGCT
GGCCAAATATTTGGCGGGTGCCCGGGTTTTGAGGCAGGACCCGGTTGAGT
GCTTGCTTCAGTTTCTCTGTTCTTCGAACAATAATATTGCGAGGATCACT
AAAATGGTTGACTTTTTGGCGAGTTTGGGGAGTCATTTGGGTAAAGTCGA
GGGTTTTGAGTTTCATGAATTCCCGTCTTTGGAAAGATTATCATTATTCT
CAGAGGTCGAGCTTAGAAATGCTGG
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