FC918221

Overview
NameFC918221
Unique NameFC918221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10207 contig Ccv1_Contig10207:50..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 84/168 (50.00%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD+I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G++NEA  Q+A AD I++NKTDL
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINKTDL 207          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 84/168 (50.00%), Postives = 120/168 (71.43%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ +KKGKFD+I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G++NEA  Q+A AD I++NKTDL
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDL 207          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD1_MOUSE (COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.005e-41
Identity = 87/181 (48.07%), Postives = 125/181 (69.06%), Query Frame = 1
Query:  325 EDSDLLTKIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            E+ D +TKIP       TI+TG+LG+GKTTLLN+ILT +H ++IAVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ +KKGKFD+I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G+VNEA  Q+A AD I++NKTDL
Sbjct:   32 ENLDFITKIP------VTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDL 205          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD1_RAT (COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 82/168 (48.81%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TI+TG+LG+GKTTLLN+ILT +H ++IAVI NE+GE       +A    G   E+ + L NGCLCC+V+ + ++ I  L+ +KKGKFD+I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G+VNEA  Q+A AD I++NKTDL
Sbjct:   40 KIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLM-QKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDL 206          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD6_HUMAN (COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G++NEA  Q+A AD I++NKTDL
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDL 207          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G++NEA  Q+A AD I++NKTDL
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDL 207          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: CBWD3_HUMAN (COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  364 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ +KKGKFD I++ETTGLA+P  +   F+ +  + +++ LDG++T+VD+K+   HL E KP G++NEA  Q+A AD I++NKTDL
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLM-QKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDL 207          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: YOG5_SCHPO (COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe GN=SPBC15D4.05 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 79/170 (46.47%), Postives = 122/170 (71.76%), Query Frame = 1
Query:  367 IPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEV-DIDGSLVAAKTTGAEDI----VLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDL 861
            +P TI+TGFLG+GKT+LL  IL   +GKR+AV+ NE G+  D++ SL+  +  G E++    V L+NGC+CCTV+ + ++ + E + ++KG+FD+IVIETTG+ANP P+ QTF+ +DA+ ++VKLDG+VT++D K+    L +    G +     QI++AD +I+NKTDL
Sbjct:   61 VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLM--EDVGGEELYEEWVALSNGCMCCTVKDNGIKAL-EKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDVKLDGIVTVIDCKNIDNILKDESDIGFI-----QISHADCLILNKTDL 222          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: YJIA_ECOLI (Uncharacterized GTP-binding protein yjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35
Identity = 78/172 (45.35%), Postives = 109/172 (63.37%), Query Frame = 1
Query:  361 NRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVLLNNGCLCCTVRGDLVRMISEL---VSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKHAGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLXG 867
            N I  T++TGFLG+GKTTLL HIL  +HG +IAVIENE+GEV +D  L+  + T    I  L NGC+CC+   +L   + +L   + K   +FD +VIE TG+A+P PIIQTF++ + +     LDGV+ LVDA HA   +++         A  Q+ YADRI++ KTD+ G
Sbjct:    2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT---QIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVAG 164          
BLAST of FC918221 vs. ExPASy Swiss-Prot
Match: YN8H_YEAST (Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae GN=YNR029C PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.973e-29
Identity = 71/185 (38.38%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  343 TKIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEV-DIDGSLVAAKTTGA-EDIVLLNNGCLCCTVRGDLVRMISELVSKKKGKFDHIVIETTGLANPAPIIQTFYAEDAIFNEVKLDGVVTLVDAKH-----------AGFHLDEVKPKGVVNEAVEQIAYADRIIVNKTD 858
            T +    RIP +IITG+LGSGK+TLL  I      K+IAVI NE+G+  +I+ ++     + + ++ + L NGCLCC+++   V+ I ++V +  GK D+I++ET+G+A+PAPI + F+ ++ + + V +DG++T++D +H           A +H D+V  +G +  A  Q+A ADRII+NK D
Sbjct:   63 TDVHEKKRIPVSIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSSEIEKAMTIKNGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGIADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTIAHFQLAMADRIIMNKYD 247          
The following BLAST results are available for this feature:
BLAST of FC918221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CBWD2_HUMAN2.934e-4150.00COBW domain-containing protein 2 OS=Homo sapiens G... [more]
CBWD1_HUMAN2.934e-4150.00COBW domain-containing protein 1 OS=Homo sapiens G... [more]
CBWD1_MOUSE5.005e-4148.07COBW domain-containing protein 1 OS=Mus musculus G... [more]
CBWD1_RAT1.902e-4048.81COBW domain-containing protein 1 OS=Rattus norvegi... [more]
CBWD6_HUMAN3.244e-4050.00COBW domain-containing protein 6 OS=Homo sapiens G... [more]
CBWD5_HUMAN3.244e-4050.00COBW domain-containing protein 5 OS=Homo sapiens G... [more]
CBWD3_HUMAN3.244e-4050.00COBW domain-containing protein 3 OS=Homo sapiens G... [more]
YOG5_SCHPO1.842e-3546.47COBW domain-containing protein C15D4.05 OS=Schizos... [more]
YJIA_ECOLI4.104e-3545.35Uncharacterized GTP-binding protein yjiA OS=Escher... [more]
YN8H_YEAST1.973e-2938.38Uncharacterized protein YNR029C OS=Saccharomyces c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA50AA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918221 ID=FC918221; Name=FC918221; organism=Citrus clementina; type=EST; length=869bp
CTCCACTCTCTGAAATATCTAAAACCCCCAGCAAAAACCTCCATTATCCA
ATTCCAAAACACGAGCCGCGGTGAAAAACAAAAAATGGCTTCTTCACTCT
CAACAGAAATGGCCACCACCTTCCTCTCCTTCACCGCTCGCCCACAAAAC
CCATTTGCTAAAATCCGAACCACTGTTCTCCCCGTCCTCTTCAAACCCAG
AGCCCGAAACTTATCCTACAAAACGATGGCGTCCTCAACTCACTCCAAAT
TTATCGCCGTCAAAGTCCCCAGACCCTACCGCCGGTTCACGGCCTCTGCT
TCTGCCGCCGCCACTACTGCCAGCGAGGACTCTGACTTGTTGACAAAGAT
TCCACCCGATAACAGAATTCCCGCCACCATAATCACCGGCTTTTTGGGTT
CGGGAAAGACGACATTGCTCAACCATATCTTGACTGCAGAACACGGGAAG
CGCATAGCTGTGATTGAGAACGAGTATGGTGAAGTGGACATTGATGGGTC
GTTAGTTGCTGCTAAAACTACTGGGGCTGAGGACATAGTTTTGCTTAACA
ATGGCTGTTTGTGCTGCACAGTAAGAGGTGATCTTGTGAGGATGATTTCA
GAATTAGTCAGTAAAAAGAAAGGGAAATTCGACCATATTGTAATTGAAAC
TACAGGATTGGCTAATCCGGCACCAATCATTCAGACATTTTATGCTGAGG
ATGCGATTTTTAATGAAGTGAAGTTGGATGGTGTTGTCACTTTGGTTGAT
GCTAAGCATGCTGGTTTTCATTTGGATGAGGTTAAGCCAAAAGGAGTTGT
CAATGAGGCAGTAGAGCAAATTGCATATGCAGACCGTATTATAGTAAATA
AGACTGATCTTNGTGGTGA
back to top