FC918229

Overview
NameFC918229
Unique NameFC918229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918229_ssr344 microsatellite FC918229_ssr344:344..353. BLAST: Citrus ESTs to Prunus persica proteins V1
FC918229_ssr22 microsatellite FC918229_ssr22:22..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11192 contig Ccv1_Contig11192:204..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_CARHZ (5'-nucleotidase surE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.755e-29
Identity = 91/249 (36.55%), Postives = 129/249 (51.81%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIF------KMGWRRVTSEMQGGKMLSTMT-MDTDSAVTIETDTS-TPLEEDL 861
            I++TNDDGI APG+++L +VL    +Y + V APD EKSA  H IT   P+ A    F       VS   + GTPADC  L V +AL    PDLV+SGIN G N G  V+YSGTV+ A EA  +G+P+++IS      +    +Y  AAE    I   +L  I    +P    LNI++P   +   KG  +T+ G   +      +   R ++     G+ ++     DTD+A     + S TP+  DL
Sbjct:    3 ILLTNDDGIYAPGIKALRQVLEKEGKYELTVVAPDREKSATGHGITVHRPLRAFDITFKNSKVRGVS---VDGTPADCVKLAV-EALLDKPPDLVLSGINSGPNLGTDVLYSGTVSAAIEAMINGIPAIAISMGSFAFED--EEYLRAAE----IFARLLPRILEHPWPRDTILNINIPNVPLEEIKGIAITRLGVRKYINVFEERKDPRGLSYYWMSGEAVNYENGQDTDTAALARKEISITPVHFDL 241          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SULDN (5'-nucleotidase surE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.047e-28
Identity = 80/186 (43.01%), Postives = 108/186 (58.06%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGV--TAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTY--PERCFLNIDLPTDI 687
            I+VTNDDG +A GLR+LV+ L       V V AP SEKSA  HS+T       RP  F GV    + + D    GTP+DC  L +S     S PDL+ISGIN GSN G  + YSGT AGA E   H VPS++IS   +       D+TLA +    +I  ++ +I+N ++  P+R FLN+++P D+
Sbjct:    5 ILVTNDDGYEAKGLRALVKALKELEDVEVMVVAPASEKSACGHSLTL-----VRPLRFVGVDDNFFKLDD----GTPSDCVYLALSTIYVDSKPDLLISGINRGSNMGEDITYSGTAAGAMEGVLHDVPSIAIS-QVMDFSDPQGDFTLAQK----VIKELVIKIKNGSFPLPQREFLNVNIPPDL 176          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_AQUAE (5'-nucleotidase surE OS=Aquifex aeolicus GN=surE PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.047e-28
Identity = 79/202 (39.11%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  136 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 738
            PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D D  T        I GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E    G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P       KG K+T+QG   +K
Sbjct:    2 PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTV-------IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRYEEIKGIKVTRQGKRAYK 186          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_DESDG (5'-nucleotidase surE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.046e-28
Identity = 82/204 (40.20%), Postives = 116/204 (56.86%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR---PADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 738
            I +TNDDGI APGLR++ + L     +TVQV AP +E+SAV H++T   P+  +      F G+  Y        GTP DC  LG++ AL    PD+V+SGIN G+N G  ++YSGTV+ A EA   G PS+++SYD      N     +AA A   +   I+  +  Q+ P RC LN++LP D+P    KG  L  Q  +++K
Sbjct:    3 IALTNDDGIQAPGLRAMYKALKEAG-HTVQVVAPVTEQSAVGHAVTIALPLRVKIFAENGFQGMGVY--------GTPTDCVKLGLN-ALLDKKPDIVVSGINAGANVGPDILYSGTVSAATEAAHMGYPSLAVSYD------NFKPDDIAAHARFAV--EIMESMPWQSLPPRCVLNLNLP-DVPMQQCKGLTLCPQTRAVWK 187          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_MOOTA (5'-nucleotidase surE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.196e-28
Identity = 77/195 (39.49%), Postives = 112/195 (57.44%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 723
            I+VTNDDGI+APG+++L R L    R  V V AP+ E+SA+ H IT   P+ A    ++G    A++   ++GTPADC  L +  AL    P LV+SGINMG+N G  V+YSGTV+GA E   +G PS+++S    GG     D++ AA+    +   I+     +  P    LN+++P   P   KG  +T+ G
Sbjct:    3 ILVTNDDGINAPGIKALSRSLARVGR--VAVVAPEKERSAIGHGITMHKPLRATEVTWEGPVEMALA---VNGTPADCVKLALD-ALLDEEPSLVVSGINMGANLGTDVLYSGTVSGALEGCINGRPSLAVSLAGEGGV----DFSFAADFTSRLAGVII----KRGLPAGTLLNLNIPCLPPGEIKGLAITRLG 183          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_FLAPJ (5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  133 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFK 738
            KP I+VTNDDGI APG+RSL+ V+      TV V APDS +SA+ H+IT    +       +     AV++   SGTP DC  L V++ L    PDL +SG+N GSN   +V+YSGT++ A EA   G+P++  S   YDW              E   P I  I  E+  +  P+   LN++ P     + KG K+ +Q  ++++
Sbjct:    3 KPLILVTNDDGISAPGIRSLIAVMQEIG--TVVVVAPDSPQSAMGHAITINSTLHLNKISAENA---AVTEYSCSGTPVDCVKLAVNEIL-KQKPDLCVSGVNHGSNSSINVIYSGTMSAAVEAGIEGIPAIGFSLLDYDW----------NADFETFKPYIKKIALEVLQKGLPDSVVLNVNFPKRKEEDLKGIKICRQAKAMWE 192          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_DESAA (5'-nucleotidase surE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.368e-27
Identity = 78/197 (39.59%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA-RPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 723
            I+VTNDDGI  PGL +L   L   +R  VQV APD E+SA++H+IT   P+ A    + +G+ ++AV+     GTPADC  LGV + L    PDLV+SGIN G N G ++ YSGTV+ AREA   G+P++++S          N Y          +  ++A++  +  P+  FLN++LP D+P  +  G ++ +QG
Sbjct:    3 ILVTNDDGIHHPGLAALRDGLARDHR--VQVVAPDRERSAIAHAITLLTPLRAFSQTNGNGIPSWAVN-----GTPADCVKLGVLE-LLGEKPDLVVSGINPGPNVGVNLNYSGTVSAAREAALLGIPAIAVSVS--------NPYGTHFSDAARFMQDLVADVAERGLPKGVFLNVNLP-DVPMEEIAGVRICRQG 182          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SYNFM (5'-nucleotidase surE OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=surE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 71/197 (36.04%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 723
            I++TNDDG+ A G+ +L   L+    + V V AP++E+SAV H+ITW  P+  +P   +G    +A     ++GTPADC  + V++ + P  PD+V+SG+NMG+N G +V+YSGTV+ A EA   G+PS+++S D         D++   E     +  +L  +  +  P    LN+++P ++P +  +G K+T+QG
Sbjct:    3 ILLTNDDGVYAKGIETLYLALIE--EHDVTVVAPETEQSAVGHAITWLDPLRVKPVHRNGHFFGHA-----LTGTPADCVKIAVAELMSPP-PDMVVSGVNMGANVGVNVIYSGTVSAATEAAVMGIPSMAVSID----SFQPTDFSAVTE----FVPRLLRIVAKEGLPPGVCLNVNVP-NLPADRIRGVKVTRQG 182          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_THEAB (5'-nucleotidase surE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.745e-27
Identity = 84/202 (41.58%), Postives = 118/202 (58.42%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIY-ISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI-SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIF 735
            I+VTNDDG+ A G+  L R L  + +Y V V AP++E+SAV H+IT R P+  R  D +        +IY +SGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    GVPS+++ SY +         Y  AA+  L      L E   ++ P    LNI++P+ +P +  KG+KLT+Q   ++
Sbjct:    3 ILVTNDDGVTADGILCLARTL--SKKYKVTVVAPETEQSAVGHAITLRLPLWLRKLDIN-----ENFEIYSVSGTPADCVKMGIDVVLGEK-PDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIAVSSYSFENPM-----YETAAKFILD----FLEEFDVRSIPRFTALNINVPS-VPYDQIKGWKLTRQSKRMY 186          
BLAST of FC918229 vs. ExPASy Swiss-Prot
Match: SURE_SYMTH (5'-nucleotidase surE OS=Symbiobacterium thermophilum GN=surE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.745e-27
Identity = 77/206 (37.38%), Postives = 113/206 (54.85%), Query Frame = 1
Query:  142 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSDIYISGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRR 753
            +++TNDDGI APG+ +L   +       V   APD E+SA  H+IT   P+     +  G  A  +S   ++GTPAD A L + +A+ P  PDLVISGIN G+N G  + YSGTVA A E    G+P++++S D        +DY+ AA+    +   +L E      PE   LN+++P  +P    KG ++TK G  I++  W R
Sbjct:    4 VLLTNDDGIFAPGINALRARMEQIPGLEVWAVAPDRERSASGHAITTYRPLFPVRVEIPGAVAPCIS---VTGTPADSAKLAI-EAILPRRPDLVISGINRGANLGTDIFYSGTVAAALEGPILGIPALAVSLD----SMTSSDYSAAADFAAQLALKVLEE----GLPEGTLLNVNVPA-LPREAIKGVRVTKVGRRIYRDQWVR 196          
The following BLAST results are available for this feature:
BLAST of FC918229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CARHZ2.755e-2936.555'-nucleotidase surE OS=Carboxydothermus hydrogeno... [more]
SURE_SULDN1.047e-2843.015'-nucleotidase surE OS=Sulfurimonas denitrificans... [more]
SURE_AQUAE1.047e-2839.115'-nucleotidase surE OS=Aquifex aeolicus GN=surE P... [more]
SURE_DESDG3.046e-2840.205'-nucleotidase surE OS=Desulfovibrio desulfurican... [more]
SURE_MOOTA5.196e-2839.495'-nucleotidase surE OS=Moorella thermoacetica (st... [more]
SURE_FLAPJ3.368e-2736.895'-nucleotidase surE OS=Flavobacterium psychrophil... [more]
SURE_DESAA3.368e-2739.595'-nucleotidase surE OS=Desulfatibacillum alkenivo... [more]
SURE_SYNFM4.399e-2736.045'-nucleotidase surE OS=Syntrophobacter fumaroxida... [more]
SURE_THEAB5.745e-2741.585'-nucleotidase surE OS=Thermosipho africanus (str... [more]
SURE_SYMTH5.745e-2737.385'-nucleotidase surE OS=Symbiobacterium thermophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA29CD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918229 ID=FC918229; Name=FC918229; organism=Citrus clementina; type=EST; length=903bp
CGCACTACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCGTCGTCTTGGACCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGC
GTCGTGGAATCGCTATTGTTAACTCCGATCACAAGCCAACGATTATGGTC
ACCAACGACGACGGGATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGT
TCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAG
AAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTCACCCAATTTCGGCC
AGACCAGCAGATTTTGATGGAGTTACCGCCTATGCCGTGTCTGATATATA
TATTTCAGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCAC
TCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGC
AACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGA
GGCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTG
GAGGTAAGAGCAATGTTAATGATTACACACTTGCTGCTGAGGCTTGTTTA
CCTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGA
AAGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGG
GGTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGA
CGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTATCAACAATGACAAT
GGACACAGATTCAGCAGTTACAATTGAAACAGATACATCTACCCCATTGG
AAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGGGGCCACATTGCTGAT
CCT
back to top