FC918255

Overview
NameFC918255
Unique NameFC918255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12032 contig Ccv1_Contig12032:812..1668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_MOUSE (Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.443e-26
Identity = 82/266 (30.83%), Postives = 139/266 (52.26%), Query Frame = 1
Query:    4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR 771
            L+ Y  +F E  ++A LDK +RRYAW+KR++   EE + ++FP  W +   ++++FC  TR +L  I+    +  +V  LL A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G   + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +         + +EG    VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+
Sbjct:  265 LSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDETTPEMEELALEKGELEQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPK 519          
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_PONAB (Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 84/269 (31.23%), Postives = 140/269 (52.04%), Query Frame = 1
Query:    4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPRGGT 780
            L+ Y  +F E  ++A LDK +RRYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+  + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +         + +EG    VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+  T
Sbjct:  265 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDLDQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTT 522          
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_HUMAN (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26
Identity = 84/269 (31.23%), Postives = 140/269 (52.04%), Query Frame = 1
Query:    4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPRGGT 780
            L+ Y  +F E  ++A LDK +RRYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL A+QRT  FE  LA++F G + +      +E    P +    + D       +LA  +G+  + K        P A  N F  I+S CFEPHL  Y+E +++ L E +++ V +         + +EG    VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+  T
Sbjct:  265 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDLDQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTT 522          
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_CHICK (Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 82/270 (30.37%), Postives = 137/270 (50.74%), Query Frame = 1
Query:    4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEE-----KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR 771
            L+ Y  +F E  ++A LDK +RRYAWIKR++   EE + ++FP  W +   + ++FC  TR +L  I+    +  +V  LL A+QRT  FE  LA++F G +      L    + +PE    + +         L    G  T+E      D +K          F  I+S CFEPHL  Y+E +++ L E +++ V +         +++EG    VL S  +LF   K+ + +C+ L+  + ++ L  +FQ+ L+ YA K+ +  LP+
Sbjct:  264 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGLLAKRFSGCT------LADGTVKKPEAPPPSTNPF-------LEDETGTETDEIVIEKSDADKPKKPKVPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNVDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPK 518          
The following BLAST results are available for this feature:
BLAST of FC918255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS53_MOUSE4.443e-2630.83Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_PONAB5.802e-2631.23Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_HUMAN5.802e-2631.23Vacuolar protein sorting-associated protein 53 hom... [more]
VPS53_CHICK2.205e-2530.37Vacuolar protein sorting-associated protein 53 hom... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA17AH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA17AH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918255 ID=FC918255; Name=FC918255; organism=Citrus clementina; type=EST; length=857bp
GAGCTAACTTCATATGAACAGATCTTCGAAGGAGCTGAGTTAGCTAAGTT
GGATAAAACTGAACGACGATATGCATGGATCAAACGTCGTATAAGAACTA
ATGAGGAAATATTCAAAATTTTTCCTCCTTCATGGCATGTTCCTTATCTG
CTCAATATCCAGTTCTGTAAGAAGACAAGGAAACAGCTGGAGGGGATCCT
TGACAATTTGACAGAAAGACCAGATGTCGGAACATTATTGTTGGCATTAC
AAAGAACCATAGAATTTGAGGATGAATTGGCAGAGAAATTTGGAGGAGAC
AGCCGCAGCAGCGAGATTGGGCTTGACATTGAAGAAATAGGTAGACCAGA
GAACAATCGTCAGAATGTTTCAGATATTCGAAAGAAGTATGAAAGAAAAC
TTGCTGCAAATCAGGGAAACTCAACTGAAGAAAAGGATGGAAACAAGGAC
TTGTCAGTGCCAGGAGCTGGGTTCAACTTCCGCAGAATCATTTCATCTTG
TTTTGAACCTCACTTGACAGCTTATGTAGAACTGGAAGAGAGGACATTAA
TGGAGAATCTGGAAAAACTTGTTCAGGAGGAAACATGGGATATCGAAGAG
GGAAGTCAGAATAATGTTCTACATAGCAGCACAGAATTGTTTTTTATAAT
CAAAAGGAGCTTAAAGCGATGCACTGCTTTAACGAAGAGCCAGACATTAT
TAAATTTGTTCAAGGTATTTCAAAGAATTCTAAAAGCATATGCAACAAAG
CTTTTTGCAAGACTACCAAGAGGTGGTACAGGGATTGTTGCAGCAGCTAC
TGGTATGGATGGACAGATAAGGATATCTGAGAGGGACGAAAGGGTTATCT
GTTATAT
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