FC919320

Overview
NameFC919320
Unique NameFC919320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length259
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919320_ssr41 microsatellite FC919320_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7227 contig Ccv1_Contig7227:236..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC919320 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.053e-40
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 FPLGRQXACSRKADHHHHHRIRTSKFGNFLELTPESEPEFLVFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHXVK 243
            FPLGRQ ACSRKADHHHHHRIRTSKFGNFLELTPES PEFL FDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRH VK
Sbjct:   31 FPLGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVK 111
The following BLAST results are available for this feature:
BLAST of FC919320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCS_CITSI2.053e-4095.06Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
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Properties
Property NameValue
Genbank descriptionC06055C01T7 PCR Citrus clementina cDNA clone C06055C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919320 ID=FC919320; Name=FC919320; organism=Citrus clementina; type=EST; length=259bp
TTTCCATTAGGCCGCCAAAANGCATGTTCAAGAAAGGCGGATCATCATCA
TCATCACAGGATCCGGACAAGCAAGTTTGGTAACTTCCTAGAGTTGACAC
CGGAGTCGGAACCTGAATTCTTAGTCTTTGATCTCCCCTGGTTTCATCCG
TCCGATCGTATTCGATATGACGTGATCATCATTGGCACTGGACCTGCCGG
CCTCCGTCTAGCTGAGCAAGTCTCATCGCGTCATANTGTCAAGGCTCGAG
GCAATCACT
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