FC920216

Overview
NameFC920216
Unique NameFC920216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14178 contig Ccv1_Contig14178:202..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.008e-75
Identity = 121/164 (73.78%), Postives = 137/164 (83.54%), Query Frame = 3
Query:   21 GSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            G+K AR+W RT C FD +G+GKC+TGDCNGLL+CQ +G  PNTLAEYAL QFN++DF D+S +DGFNV MEFS  S  C R IKCTA+I G+CPNEL+ PGGCN PC VFKTD+YCCNSGNCG T FSKFFKDRCPD YSYPKDD TSTFTCP GT+YKVVFCP
Sbjct:   62 GTKGARVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAFGQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPTSGGCTRGIKCTADINGQCPNELRAPGGCNNPCTVFKTDQYCCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.175e-70
Identity = 112/170 (65.88%), Postives = 134/170 (78.82%), Query Frame = 3
Query:    3 TITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            ++    G+K AR+WART C FD SG+G C+TGDC G+L+C+ YGA PNTLAEY L  FN++DF D+S +DGFNVPM+FS  S  C R I CTA+I G+CP+ELK  GGCN PC VFKTD+YCCNSG+CGPT +S+FFK RCPD YSYPKDD  STFTC  GTDY+VVFCP
Sbjct:   33 SVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGISCTADINGQCPSELKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.692e-65
Identity = 110/172 (63.95%), Postives = 133/172 (77.33%), Query Frame = 3
Query:    3 TITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            +I   PG+  ARIW RT C FD SG+G CETGDCNG+LECQGYG APNTLAE+AL Q N  DF+D+S +DGFN+PMEFS  +  C R ++CTA I  +CP +LK  GGCN PC V KT+EYCC +  G+CGPT  S+FFK+RCPD YSYP+DD TS FTCP+GT+Y+VVFCP
Sbjct:   57 SINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKAPNTLAEFALNQPN-QDFVDISLVDGFNIPMEFSPTNGGC-RNLRCTAPINEQCPAQLKTQGGCNNPCTVIKTNEYCCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.188e-64
Identity = 107/172 (62.21%), Postives = 130/172 (75.58%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 512
            I A  G+K AR+W RT C F+A+G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+ +DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP EL+VPGGCN PC  F   +YCC  G CGPT FSKFFK RCPD YSYP+DD TSTFTCP G T+Y+V+FCP
Sbjct:   55 INAPRGTKMARVWGRTNCNFNAAGRGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 226          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.776e-64
Identity = 111/173 (64.16%), Postives = 131/173 (75.72%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS-CNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            ITA  G+ AARIWART C+FDASG+G C TGDC G+L+C GYG APNTLAEYALKQFN++DF D+S IDGFNVPM F     S C+R  +C  ++   CP EL+  G CN  CPVFK DEYCC    + +C PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:   55 ITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.776e-64
Identity = 105/166 (63.25%), Postives = 135/166 (81.33%), Query Frame = 3
Query:   21 GSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            G+K ARIW RT C FD+SG+G+C+TGDC+G L+C G+G  PNTLAEYAL QFN++DF D+S +DGFN+PMEFS  S +C+R++ CTA+I G+CPN L+ PGGCN PC VF+T++YCC +  G+C  T +S+FFK RCPD YSYP+DD TSTFTC T T+Y+VVFCP
Sbjct:   60 GTKMARIWGRTNCNFDSSGRGRCQTGDCSGGLQCTGWGQPPNTLAEYALNQFNNLDFYDISLVDGFNIPMEFSPTSSNCHRIL-CTADINGQCPNVLRAPGGCNNPCTVFQTNQYCCTNGQGSCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.776e-64
Identity = 108/172 (62.79%), Postives = 129/172 (75.00%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 512
            I A  G+K ARIW RT C F+A+G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGFN+PM F+   PS  +   I CTANI GECP  LKVPGGCN PC  F   +YCC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:   55 INAPRGTKMARIWGRTGCNFNAAGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 106/172 (61.63%), Postives = 129/172 (75.00%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 512
            I A  G+K ARIW RT C FD +G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:   55 INAPRGTKMARIWGRTNCNFDGAGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 110/173 (63.58%), Postives = 130/173 (75.14%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS-CNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 512
            ITA  G+ AARIWART CQFDASG+G C TGDC G+++C GYG APNTLAEYALKQFN++DF D+S +DGFNVP  F     S C+R  +C  ++   CP EL+  G CN  CPVFK DEYCC    + NC PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:   34 ITAPAGTTAARIWARTGCQFDASGRGSCRTGDCGGVVQCTGYGRAPNTLAEYALKQFNNLDFFDISILDGFNVPYSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANNCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206          
BLAST of FC920216 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.509e-63
Identity = 106/172 (61.63%), Postives = 128/172 (74.42%), Query Frame = 3
Query:    6 ITAEPGSKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 512
            I A  G+K ARIW RT C FD  G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:   47 INAPRGTKMARIWGRTNCNFDGDGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 218          
The following BLAST results are available for this feature:
BLAST of FC920216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TLP_ACTDE1.008e-7573.78Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN2.175e-7065.88Protein P21 OS=Glycine max PE=1 SV=1[more]
PRR1_TOBAC4.692e-6563.95Pathogenesis-related protein R major form OS=Nicot... [more]
OSMO_TOBAC5.188e-6462.21Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
ZEAM_MAIZE6.776e-6464.16Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
OSL3_ARATH6.776e-6463.25Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
OS81_SOLCO6.776e-6462.79Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
OS13_SOLCO1.156e-6361.63Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
IAAT_MAIZE1.156e-6363.58Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]
TPM1_SOLLC1.509e-6361.63Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionC32005E02EF RVDevelop1 Citrus clementina cDNA clone C32005E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920216 ID=FC920216; Name=FC920216; organism=Citrus clementina; type=EST; length=717bp
GGACCATCACCGCCGAGCCAGGCTCAAAAGCAGCCCGCATTTGGGCTCGA
ACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTGA
CTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACCT
TGGCCGAGTACGCGTTGAAGCAATTCAATGACATGGATTTCATTGACATG
TCCAACATTGACGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTCC
CTCATGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGCC
CGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTTC
AAGACCGACGAGTACTGTTGCAATTCAGGCAACTGCGGACCTACAGGTTT
CTCCAAGTTTTTCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAGG
ATGACGCTACCAGCACATTTACTTGCCCGACTGGGACAGACTACAAGGTT
GTATTCTGCCCCTGAAGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAA
AACTATACGACATAGCCTTCTATATCTGTTATAATATTGGAATAAGGACC
GTGTGGTCTTCACTGCCATAGAGCTGGAGCAGGCACATGTAGTTATGTGC
GTGTATGAACTATAATTTGTTCGTGAATTAAAGGGAGATACCCGAAAAAA
AAAAAAAAAAAAAAAAA
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