FC920317

Overview
NameFC920317
Unique NameFC920317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920317_ssr68 microsatellite FC920317_ssr68:68..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 56/189 (29.63%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  118 VATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERINFQFL 675
            V  YL KKG+S  E  L+ E   +  S       I                E+ P  Y   Y+ LR W  SSL+LYK EL  +L+P+F+H +++L+++ H + A+ F+  F++DH  +H  D++ L+ +  PSH+ E   A   R +K  +   + +++LLL +L +  S   + ++ +IN+ I+   +
Sbjct:   16 VLDYLAKKGYSRTEAMLRLEASGSGVSVEEKLKSI----------------EETPDAYTHTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSHVAEDRTAQQYRQNKYQLHFSRITFDLLLHFLFENVSNGGSIIIKLINQHIDIHIV 188          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_ENCCU (Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi GN=TAF5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.822e-19
Identity = 40/126 (31.75%), Postives = 80/126 (63.49%), Query Frame = 1
Query:  292 QDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINFQ 669
            +  Y  L++W   SLDL+K++LL +LYP+FIH + DL+ +    EA+ FF  +R DH      ++++ E + +  H+ E  FA++ ++SK ++ + +Y+++LL+ +L +   T +L I+N+ ++ +
Sbjct:   20 ETSYVSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDH-YNKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLINFLEERNLTYILKILNQHLDIK 144          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  112 EFVATYLKKKGFSEAENALQAEIQRNKSSNNTNPIDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQ---STKMLGIINERINFQFLL 678
            + V  YL KKG+S  E  L+ EI    SS    P       E   +    SE+      Y   Y  LR W   +LDLYK +L  VLYP+F+H ++DL+ K   + A  FF +FR +HE++H  D++ L  +   S +EE+E A   R +K  I   + +++LL+Q+L + +   S  ++ ++N+ I+ +  +
Sbjct:   17 KIVLDYLFKKGYSRTEAMLRLEI----SSVGAIP------EEQQDWHIGASET------YVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNGSGIIIRLLNQYIDIKITM 192          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 62/216 (28.70%), Postives = 105/216 (48.61%), Query Frame = 1
Query:  118 VATYLKKKGFSEAENALQAEIQRNKSSNN-----------------------------TNPIDILN--DPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQS---TKMLGIINERIN 663
            V  YL KKG+   E  L+AE  R  +  N                             +NP ++ +  D E         E  + P  Y   YS L++W  SSL++YK EL +++YP+FI+ F++LVAK  +  AR FF+ F  D +  H  ++ +L  V S  H++E E A + +  K  I + + +  LLL +L++ +S   + ++ +IN+ ++
Sbjct:   64 VLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVY-ARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLD 278          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 44/149 (29.53%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  214 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 660
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +
Sbjct:  190 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHL 337          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.172e-17
Identity = 44/149 (29.53%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  214 IDILNDPELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERI 660
            + + + P++S     +++  D P  Y++ YS L+ +   SLD ++ EL  + YP+F+H +++LV   H  EA++FF  F  D E  +  DL+ L  +    H++  E     R SK  ++I + SY+LL ++L + Q+ ++  I+ E +
Sbjct:  191 VAVEDQPDVSAVLSAYNQQGD-PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQLLKRHLQEKQNNQIWNIVQEHL 338          
BLAST of FC920317 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 36/144 (25.00%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  235 ELSKFFRTFSESEDGPARYQDEYSKLRSWTYSSLDLYKHELLHVLYPVFIHCFMDLVAKGHIQEARTFFNNFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRHSKVNIKICQYSYELLLQYLHKTQSTKMLGIINERINF 666
            EL+KF     +       Y+  Y +LR++   SLD+YKHEL  VLYP+ +  +  ++A G  ++A+ F   ++ D +  ++  L  L  +  P  L E +   ++   K  I++ + S+ L  +++   +   +  I+++ ++F
Sbjct:  101 ELAKFI---DDDSFDAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKILASGLREKAKEFIEKYKCDLDGYYIEGLFNLLLLSKPEELLENDLVVAMEQDKFVIRMSRDSHSLFKRHIQDRRQEVVADIVSKYLHF 241          
The following BLAST results are available for this feature:
BLAST of FC920317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TAF5_SCHPO4.032e-2029.63Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_ENCCU5.822e-1931.75Transcription initiation factor TFIID subunit 5 OS... [more]
TAF73_SCHPO2.889e-1832.29Transcription initiation factor TFIID subunit taf7... [more]
TAF5_YEAST1.434e-1728.70Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_HUMAN3.194e-1729.53Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_MOUSE4.172e-1729.53Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_DROME9.953e-1125.00Transcription initiation factor TFIID subunit 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionC32006G07EF RVDevelop1 Citrus clementina cDNA clone C32006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920317 ID=FC920317; Name=FC920317; organism=Citrus clementina; type=EST; length=768bp
GGAGGACGACGTCCCTGTTCTCTCTGGCCCTTGATTAACCAGAGAGCATC
ATCAACACTGCAGGAGAAAGAAGAAGAAGAAGAAGAGAGAATGGACGAGC
TGCAAGTAGTGGAATTCGTAGCAACGTACTTGAAGAAGAAAGGATTCAGT
GAAGCCGAAAACGCATTGCAAGCTGAAATTCAACGAAACAAGAGCAGTAA
CAACACCAATCCAATCGACATCCTCAACGACCCCGAACTCTCCAAGTTCT
TTCGCACCTTCTCCGAATCAGAAGATGGTCCAGCTCGTTACCAGGATGAA
TATAGCAAGCTTAGGTCATGGACTTATAGCTCCCTGGATCTCTATAAGCA
TGAGTTGCTTCATGTGCTTTATCCAGTCTTCATCCATTGTTTCATGGATC
TGGTGGCAAAAGGCCACATCCAAGAGGCTAGAACATTTTTCAATAACTTT
CGTGAAGACCATGAAATGATGCACTTACGAGATCTTCAGAAGTTGGAAGG
TGTTCTTTCGCCCTCTCATCTGGAGGAGATGGAATTTGCTCATTCTTTAA
GGCACAGCAAAGTCAACATTAAGATATGTCAGTATTCATATGAGCTTCTG
CTTCAGTATCTACACAAGACACAATCCACAAAAATGCTTGGGATTATCAA
TGAACGCATTAACTTCCAGTTTCTCCTGGACAGCCAGCTCAATTCTGATG
AGCTGAAATTGTACCCTTATGGAGCATCAGATGCGCCACCAGATAATCAG
AAGAGTACATGGGGTGCT
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