FC920351

Overview
NameFC920351
Unique NameFC920351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  279 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDG-GPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGL 683
            NF ++AI+ V+QA ++DNA NYA+A  LY+ +LE+F T LKYEK+ + K  I  K  EYL+RAE+++  LD      P   G     +                  DPE  K    L+S+I+  KPN KW+DVAGL
Sbjct:    5 NFLQKAIQIVQQATEQDNAKNYAEAHRLYIQSLEWFTTALKYEKSERSKATIKAKTLEYLQRAEQLKEYLDKSKNKKPVAVGGNKSNSAGSANGAGKSAKEDDEDMDPEDKKRNDSLSSSIVTTKPNVKWDDVAGL 140          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  279 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            +F  + IE V++A+  D A  Y +A+  Y N L+Y    LKYEKNPK K+ I  KFTEYL RAE+++  L+      A    +A  +      K             +  KLR  L+SAI+ EKPN KW DVAGL+
Sbjct:    5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEANAAKKSPSA-GSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLE 139          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 53/137 (38.69%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  291 QAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD-----GGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            +AI  VK A+  DNA  Y  A+  Y +AL+YF   LKYEKN K KE I  K  EYL RAE+++  L +            NG+   +  P                D +  KLR+ L SAI+ EKPN +W+D+AGL+
Sbjct:    9 KAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEAL----------DSDAKKLRSALTSAILVEKPNVRWDDIAGLE 135          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  288 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L   +     P   G  A A       K          +DPE+ KL+  L  AI+ E+PN KW+DVAGL+
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKREKKPQKPVKEGQPAPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE 140          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 53/137 (38.69%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  288 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L   +     P   G  + A       K          +DPE+ KL+  L  AI+ E+PN KW+DVAGL+
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE 140          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 52/137 (37.96%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  288 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  + TEYL RAE+++  L   +     P   G  + A       K          +DPE+ KL+  L  AI+ E+PN KW+DVAGL+
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAQCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE 140          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 51/134 (38.06%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  288 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L      P                K          +DPE+ KL+  L  AI+ E+PN KW+DVAGL+
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKP--QKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE 140          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 50/140 (35.71%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  270 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE  + K KE+I  K  +YL RAE+++  L +       +G   V    + + +          ++PE+ KL+  L  A++ EKPN +WNDVAGL+
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRN----KEKHGKKPV---KENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLE 133          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 50/140 (35.71%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  270 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE  + K KE+I  K  +YL RAE+++  L +       +G   V    + + +          ++PE+ KL+  L  A++ EKPN +WNDVAGL+
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRN----KEKHGKKPV---KENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLE 133          
BLAST of FC920351 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  270 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNXKWNDVAGLK 686
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE  + K KE+I  K  +YL RAE+++  L   +  G  P            + + +          ++PE+ KL+  L  A++ EKPN +WNDVAGL+
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPV----------KENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLE 133          
The following BLAST results are available for this feature:
BLAST of FC920351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VPS4_DICDI6.102e-2040.44Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4_YEAST3.028e-1939.71Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4_SCHPO3.348e-1838.69Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4B_BOVIN1.662e-1739.42Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN2.170e-1738.69Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB6.314e-1737.96Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_MOUSE1.837e-1638.06Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT3.465e-1535.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE3.465e-1535.71Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN3.465e-1534.97Vacuolar protein sorting-associated protein 4A OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32007B12EF RVDevelop1 Citrus clementina cDNA clone C32007B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920351 ID=FC920351; Name=FC920351; organism=Citrus clementina; type=EST; length=723bp
GTCATGCAAATTGCGAAGGGGTCAAATTGGTTTGCTTTCCTTTCGGAGAA
ACAACCTTTTTTTTTTTTTTTCCCCAAAACAAAACCAAATAACCAATCCA
AAGAGGAATCCGTGGACACGGCTGCTTCACTTTGACATTTAATCAAACAC
AAAACAAACAGGAAACTCAAATTCGAAATCGAAATCTTTCAATTCACCCA
AAAATCAAAATTAGTAATTTCACATGCGATCCGATCATAAACCCTAACCA
ATAAATTTATAATTTGAAGATGTACAGCAACTTCAAGGAACAGGCAATCG
AGTACGTGAAACAAGCCGTGCAAGAAGACAATGCTGGAAATTACGCAAAA
GCCTTCCCTCTTTACATGAACGCCTTGGAGTATTTCAAAACCCACTTGAA
GTACGAGAAGAATCCCAAGATTAAGGAGGCGATCACTCAGAAATTCACCG
AGTATTTGCGCCGGGCCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGG
CCCGGCCCCGCTCACAACGGGGACGCTGCGGTGGCGACCCGGCCTAAGAC
GAAGCCGAAGGATGGTGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGG
AGCAGGCGAAGCTGAGGGCTGGATTGAATTCGGCGATTATTAGGGAGAAG
CCTAATGNTAAGTGGAATGACGTGGCGGGTTTAAAAGCGCTAAGCAAGCT
TTGCAGGAGCTGTGATTTGCCGG
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