FC920409

Overview
NameFC920409
Unique NameFC920409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14136 contig Ccv1_Contig14136:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920409 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.805e-35
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:  187 KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 411
            K+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:   26 KDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100          

HSP 2 Score: 46.2098 bits (108), Expect = 6.805e-35
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 3
Query:  111 MSRVPEVKWAQRQDKVFITVQLPDAK 188
            MSR PEVKWAQR DKV+ITVQL DAK
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAK 26          
BLAST of FC920409 vs. ExPASy Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.807e-35
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:  187 KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 411
            K+AKVNLEPEGVFSFSA+AG + +LYE KLEL DKVNVEESKI+VGVRSIFCIVEKAE  WWKKL+R D K PH+
Sbjct:   26 KDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKVNVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHF 100          

HSP 2 Score: 46.2098 bits (108), Expect = 6.807e-35
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 3
Query:  111 MSRVPEVKWAQRQDKVFITVQLPDAK 188
            MSR PEVKWAQR DKV+ITVQL DAK
Sbjct:    1 MSRHPEVKWAQRIDKVYITVQLADAK 26          
BLAST of FC920409 vs. ExPASy Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.819e-17
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  187 KNAKVNLEPEGVFSFSASAGAENHLYELKLELFDKVNVEESKINVGVRSIFCIVEKAEKGWWKKLLRGDGKTPHY 411
            K+  V  EP+G+FSFSA  GA+   +E  LEL+ K+  E  K NVG+R+I   ++K E+ WW +LL+ + K   Y
Sbjct:   26 KDISVKCEPQGLFSFSA-LGAQGERFEFSLELYGKIMTEYRK-NVGLRNIIFSIQKEERSWWTRLLKSEEKPAPY 98          

HSP 2 Score: 45.0542 bits (105), Expect = 3.819e-17
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 3
Query:  111 MSRVPEVKWAQRQDKVFITVQLPDAK----KCQ 197
            MSR PEV WAQR DKV++TV LPDAK    KC+
Sbjct:    1 MSRNPEVLWAQRSDKVYLTVALPDAKDISVKCE 33          
The following BLAST results are available for this feature:
BLAST of FC920409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y8359_ORYSJ6.805e-3578.67Uncharacterized protein Os08g0359500 OS=Oryza sati... [more]
Y8359_ORYSI6.807e-3578.67Uncharacterized protein OsI_027940 OS=Oryza sativa... [more]
Y3377_ARATH3.819e-1742.67Uncharacterized protein At3g03773 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32008A01EF RVDevelop1 Citrus clementina cDNA clone C32008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920409 ID=FC920409; Name=FC920409; organism=Citrus clementina; type=EST; length=665bp
AACACGCTTGCTTTCCCGTTACTTGACAAAACCACAGGCTGTCGCAACTC
TCGCTCTCGCTCTCGCTCTCGCTCTAGGGTTTTACTGTTTTCTTTCCATT
TCGAGACAATATGAGCCGTGTTCCTGAGGTGAAGTGGGCCCAGAGGCAAG
ATAAGGTATTTATAACCGTGCAATTACCTGACGCAAAAAAATGCCAAGGT
AAATCTTGAGCCAGAGGGAGTGTTCTCCTTCTCTGCTAGTGCTGGTGCTG
AAAACCACCTTTATGAGCTCAAGCTGGAGCTTTTTGATAAGGTCAACGTG
GAGGAAAGCAAAATTAATGTAGGTGTAAGGAGCATATTCTGCATCGTGGA
GAAGGCAGAAAAAGGATGGTGGAAGAAACTACTTCGTGGAGATGGCAAGA
CACCACATTATGTCAAAGTTGATTGGGACAAATGGGTAGACGAAGACGAG
GATAATGGTGCAGGTGACTTGGATCTTGGGGGGATGGACTTTTCGAATTT
TGGTGGCATGGGAGGTGATGATGGTATGGGTGGCTTTGAAGACAGTGATG
ATGAAGAAGTGTCAAAGCCGCAACAAGAAGTTCGCAAGGCAGGAGATACT
AATCAAGAAGAGGAAGGTGAGGACAAGAGTGATGCTGGCATTACTGAAGG
GAAACAGAAGCTGCT
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