FC920508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36 Identity = 74/161 (45.96%), Postives = 113/161 (70.19%), Query Frame = 3 Query: 123 NQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSV 605 NQ+ LKFTSK L++Q GNMDGARIYA+N+IR++ + +NYLRLASR+DAV +R++T +M ++ SMANIVKS+E S+ +L+K+++ MD FE+QF +++VQ+ ++E+AM +T+LSTP +V+ L+ QVAD++GL V + Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGM 163
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33 Identity = 73/181 (40.33%), Postives = 116/181 (64.09%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ +V T Sbjct: 1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32 Identity = 72/181 (39.78%), Postives = 115/181 (63.54%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L T NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T Sbjct: 1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32 Identity = 70/181 (38.67%), Postives = 117/181 (64.64%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M + EK + +LKF +K LQR GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VK ++++L + NL+K+S M+ FE+QF ++VQ ME +M+ +T+L+TP+G+V++LM ++AD+ GL++++ LPQ +V T Sbjct: 1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32 Identity = 71/181 (39.23%), Postives = 116/181 (64.09%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32 Identity = 71/181 (39.23%), Postives = 115/181 (63.54%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M N EK + +LKF +K L R GNM+ ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ +V T Sbjct: 1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31 Identity = 68/173 (39.31%), Postives = 111/173 (64.16%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617 M N EK + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ 170
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30 Identity = 69/181 (38.12%), Postives = 114/181 (62.98%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M + EK + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++S+ LPQ +V T Sbjct: 1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30 Identity = 68/181 (37.57%), Postives = 114/181 (62.98%), Query Frame = 3 Query: 99 MGNTEKLLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPT 641 M + EK + +LKF +K L R GN + ARI+AEN+IR++ + +N+LR+++R+DAV AR+ T M + KSMA +VKS++++L + NL+K+S MD FE QF ++VQ + ME M+ +T+L+TP+ +V++L+ ++AD+ GL++++ LPQ +V T Sbjct: 1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGT 178
BLAST of FC920508 vs. ExPASy Swiss-Prot
Match: CHM1A_PONAB (Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28 Identity = 64/163 (39.26%), Postives = 104/163 (63.80%), Query Frame = 3 Query: 129 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ 617 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQ 167 The following BLAST results are available for this feature:
BLAST of FC920508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920508 ID=FC920508; Name=FC920508; organism=Citrus clementina; type=EST; length=711bpback to top |