FC920629

Overview
NameFC920629
Unique NameFC920629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14116 contig Ccv1_Contig14116:259..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920629 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 70/233 (30.04%), Postives = 101/233 (43.35%), Query Frame = 2 
Query:   17 DNTTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSPLDV--DLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVK--VVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 661
            D   LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +        G  LGL S        L    AVE DT +N N                + N + S   V    ++G     +I YN D  +LSV ++Y      +   V   ++L   +P  V VGF+ +TG ++++H +++WTFNS
Sbjct:   49 DQRDLILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272
The following BLAST results are available for this feature:
BLAST of FC920629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEC2_CLALU1.751e-1130.04Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC32011A02EF RVDevelop1 Citrus clementina cDNA clone C32011A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920629 ID=FC920629; Name=FC920629; organism=Citrus clementina; type=EST; length=716bp
CGCCAAAGACAGTTGTGACAATACGACCCTCATTTGCTACGGAGCGATTG
AAAGTTCCGGCGCCTTAAGCATCACACCAGGCCCTCCACCAAACCTGCCG
ATCAGAAAGGTTGGACGGGTTTTATACGGCAAGCCTCTGAGTTTACAGCG
ATCTTTTATTGATACCACCATCACCATTAAGATCTCACGCCATCAGAATT
ACACTGATCGTGCCGGAGATGGCATGACGTTCATTTTTGCAAGCGATAAA
AACGGTCCATCAGCAAAGGGCGTCGGCGAATATCTTGGACTGCAGTCTTC
ACCAGGCGATAAATTTCCTCCATTAGCCGTGGAGCTGGACACATGCCTGA
ACAAGAACCTGAATGATCCAGATGATAACCATATTGGCATCGACATAAAC
GGAATCGAATCAAATCCAGTTAATAGTCCGCTTGACGTTGATCTCAAAAG
TGGACGAGCAATCCAGGTTCGAATTTATTACAATCCAGACTTTGGACAAC
TCTCTGTTTATGCGGCATATTCGGGGGAAACACTTGTGAAGGTGGTTGAA
AAACCCATTAACCTGTCAGATATAATTCCAACGCCCGTCTATGTTGGATT
CACAGCAGCTACGGGGGACTTTTTAGAAAGCCATGAGGTTATAAATTGGA
CCTTCAACTCGTTCCCAGTGCCGCCTTCTCTCAAGGAGAAAAACTGGTGA
TGCCAATATATCTAAA
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