FC920959

Overview
NameFC920959
Unique NameFC920959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length272
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920959 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.117e-22
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   10 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 159
            KNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR I
Sbjct:  193 KNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242
[Close]
BLAST of FC920959 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.487e-22
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   10 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 165
            KNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVIIP+GI P
Sbjct:  194 KNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245
The following BLAST results are available for this feature:
BLAST of FC920959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB121_HORVU1.117e-2292.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.487e-2292.31Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC32201D02EF RVDevelopN Citrus clementina cDNA clone C32201D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920959 ID=FC920959; Name=FC920959; organism=Citrus clementina; type=EST; length=272bp
CAAGGAGATAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTG
CGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAA
CTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCC
AGAGGGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACTG
TAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCAAAA
AAAAAAAAAAAAAAAAAAAAAA
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