FC920983

Overview
NameFC920983
Unique NameFC920983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.284e-41
Identity = 86/112 (76.79%), Postives = 95/112 (84.82%), Query Frame = 2
Query:   50 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 379
            M   Q  TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.481e-40
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 2
Query:   71 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 379
            TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.253e-39
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 2
Query:   71 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 376
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.098e-35
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 2
Query:   50 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 322
            MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.095e-30
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 2
Query:   83 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 370
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26
Identity = 55/93 (59.14%), Postives = 77/93 (82.80%), Query Frame = 2
Query:   74 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 352
            GL VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.039e-26
Identity = 59/100 (59.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:   77 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGEKK 376
            L VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  ELLKV KDKRALK  K++LGTH R K+KR+E+SN L   R     ++K
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.345e-25
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 2
Query:   74 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 352
            GL VGLNKG  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK K EE+++ ++ SR
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   83 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 352
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of FC920983 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   83 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 352
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of FC920983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH2.284e-4176.7960S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH1.481e-4080.0060S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH1.253e-3979.0560S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_DAUCA1.098e-3581.3260S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36_ENTCP3.095e-3069.7960S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36A_SCHPO2.076e-2659.1460S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC6.039e-2659.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO1.345e-2559.1460S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_XENTR1.139e-2462.2260S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA1.139e-2462.2260S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201F08EF RVDevelopN Citrus clementina cDNA clone C32201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920983 ID=FC920983; Name=FC920983; organism=Citrus clementina; type=EST; length=562bp
ACTCCAGCTCATCTTAGGTTTCCGCAGCAACTCAGTTTCGTCGGAGGTGA
TGGCTCCGAAACAGCCAAATACTGGTCTCTTTGTTGGATTAAACAAGGGT
CATATTGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAAAGG
GAAAACAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAAGTTG
CTGGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTCGGC
AAGGACAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACTCACAA
GAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAAGAGTA
GGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCATAACTTTGCTAGAT
GTCTTGTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGTTTTAGCC
TATGTTGTTTGCCTTTTTTTCCCCTTCATTTCAAAAACTGAGTTAAAGAT
GTCAATTTGAGTGCTACAATGACCTTTACCTTTTTCCAAAAAAAAAAAAA
AAAAAAAAAAAA
back to top