FC920985

Overview
NameFC920985
Unique NameFC920985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1_MEDTR (Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.580e-41
Identity = 77/138 (55.80%), Postives = 92/138 (66.67%), Query Frame = 3
Query:  225 QFLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVC-DSGDVFMTCNYDPVGNYVGERPY 635
            QFL   N+ RA     PLVWD  L  YA+W+ANQR+ DC L+HS    N   GENIFWGSG    P  AVS W  E+++Y Y  N+C +G+ CGHYTQ+VW +T ++GCA VVC D    FMTCNYDP GNY GERPY
Sbjct:   40 QFLIPQNIARAAVGLRPLVWDDKLTHYAQWYANQRRNDCALEHS----NGPYGENIFWGSGVGWNPAQAVSAWVDEKQFYNYWHNSCVDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGTFMTCNYDPPGNYYGERPY 173          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34
Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERPY 635
            +L  HN  RA     PL WD  +  YA+ +A+Q  ADC L HS  +     GEN+ WGSG   T   AV +W  E++YY + +NTC +GQ CGHYTQ+VW+N+ R+GCARV C++G   ++CNYDP GN +G+ PY
Sbjct:   37 YLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQ----YGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERPY 635
            +L  HN  RA     PL WD  +  YA+ +A+Q  ADC L HS  +     GEN+  GSG   T   AV +W  E++YY + +NTC +GQ CGHYTQ+VW+N+ R+GCARV C++G   ++CNYDP GNY GE PY
Sbjct:   37 YLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQ----YGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1_SAMNI (Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 64/132 (48.48%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  240 HNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERPY 635
            HN  R+     P+ WD  +  +AR +A  R  DC+L HS    + + GEN+ +GSG   T R+AV +W  E   Y   TNTC  G+ CGHYTQ+VW+N+ RIGCARV C++G  F+TCNY P GNY G+RPY
Sbjct:   39 HNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS---GDPRYGENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSPPGNYAGQRPY 167          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERPY 635
            +L  HN  RA     PL WD  +  YA+ + +Q  ADC L HS  +     GEN+  GSG   T   AV +W  E++YY + +NTC +GQ CGHYTQ+VW+N+ R+GCARV C++G   ++CNYDP GN +G+ PY
Sbjct:   37 YLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSHGQ----YGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS-GSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG-DVFMTCNYDPVGNYVGERPY 635
            ++  HN  RA      + W   L+ +A+ +ANQR  DCKLQHS        GENIFWGS G+     DAV+ W  E+K Y Y +NTC  G+ CGHYTQ+VW+ +  IGCARVVC++   VF+TCNY+P GN VG++PY
Sbjct:   31 YVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHS----GGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR12_HORVU (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31
Identity = 67/138 (48.55%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS-GSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG-DVFMTCNYDPVGNYVGERPY 635
            ++  HN  R+      + W   L+ +A+ +ANQR  DCKLQHS        GENIFWGS G+     DAV+ W  E+K Y Y +NTC  G+ CGHYTQ+VW+ +  IGCARVVC++   VF+TCNY+P GN VG++PY
Sbjct:   31 YVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHS----GGPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS-GSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG-DVFMTCNYDPVGNYVGERPY 635
            ++  HN  R+      + W   L+ +A+ +ANQR  DCKLQHS        GENIFWGS G+     DAV+ W  E+K Y Y +NTC  G+ CGHYTQ+VW+ +  IGCARVVC++   VF+TCNY+P GN +G++PY
Sbjct:   31 YVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHS----GGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVFITCNYEPRGNIIGQKPY 164          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PRMS_MAIZE (Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.051e-30
Identity = 67/138 (48.55%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS-GSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVC-DSGDVFMTCNYDPVGNYVGERPY 635
            +L   N  RA     P+ W   L+++A  +A QR  DC+LQHS        GENIFWGS G      DAV  W  E+++Y YATN+C  G+ CGHYTQ+VW+ T  IGCARVVC D+  VF+ CNY+P GN  G +PY
Sbjct:   34 YLTPQNSARAAVGVGPVTWSTKLQQFAEKYAAQRAGDCRLQHS----GGPYGENIFWGSAGFDWKAVDAVRSWVDEKQWYNYATNSCAAGKVCGHYTQVVWRATTSIGCARVVCRDNRGVFIICNYEPRGNIAGMKPY 167          
BLAST of FC920985 vs. ExPASy Swiss-Prot
Match: PR04_SOLLC (Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 66/136 (48.53%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  228 FLFDHNLVRAMKWELPLVWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTGTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERPY 635
            +L  HN  RA     P+ WD +L   A+ +AN R  DC L HS        GEN+  G G   T R AV +W  E   Y YATN C  G+ CGHYTQ+VW+N+ R+GC R  C++G  F++CNYDPVGN+VGERPY
Sbjct:   31 YLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS------GAGENLAKGGGDF-TGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159          
The following BLAST results are available for this feature:
BLAST of FC920985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PR1_MEDTR8.580e-4155.80Pathogenesis-related protein PR-1 OS=Medicago trun... [more]
PR1C_TOBAC5.955e-3447.79Pathogenesis-related protein 1C OS=Nicotiana tabac... [more]
PR1A_TOBAC8.600e-3348.53Pathogenesis-related protein 1A OS=Nicotiana tabac... [more]
PR1_SAMNI7.280e-3248.48Pathogenesis-related protein PR-1 type OS=Sambucus... [more]
PR1B_TOBAC7.280e-3246.32Pathogenesis-related protein 1B OS=Nicotiana tabac... [more]
PR13_HORVU7.280e-3249.28Pathogenesis-related protein PRB1-3 OS=Hordeum vul... [more]
PR12_HORVU1.242e-3148.55Pathogenesis-related protein PRB1-2 OS=Hordeum vul... [more]
PR1_HORVU2.118e-3147.83Pathogenesis-related protein 1 OS=Hordeum vulgare ... [more]
PRMS_MAIZE1.051e-3048.55Pathogenesis-related protein PRMS OS=Zea mays GN=P... [more]
PR04_SOLLC2.342e-3048.53Pathogenesis-related leaf protein 4 OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionC32201F10EF RVDevelopN Citrus clementina cDNA clone C32201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920985 ID=FC920985; Name=FC920985; organism=Citrus clementina; type=EST; length=742bp
GGTCGAATAGAATAGATTACTCCTTCAAATTTCGTGCGACAGACACAAAA
ATGAAGCCCCAATTGCAGCCTCTCTGCAAGATTATTGTTCTGTTCATCAT
CACCACTAAGACTCTGTTGGTCACTTCTCAACCTGAGACGCACCGTTTAA
GCCCGGACAACGACAACGCAACCATATACAGGGTCTCCAAGCAACTATGC
TGGGGTTGTATAGGTGAGGCACTTCAGTTCTTGTTTGATCACAACTTAGT
GAGGGCCATGAAATGGGAGCTACCGTTGGTGTGGGACTATGACTTAGAGA
AATACGCGAGGTGGTGGGCGAACCAAAGGAAAGCGGATTGCAAACTGCAG
CATTCGTTCCCGGAGGACAATTTCAAGCTTGGCGAGAACATATTTTGGGG
CAGTGGGTCGACGGGGACGCCGAGGGACGCAGTGAGTGTATGGGCCGGAG
AAGAGAAGTACTATACGTACGCCACGAATACGTGCCAAGAGGGGCAGCAG
TGCGGGCATTATACGCAGATTGTCTGGAAGAATACGAGGAGAATTGGATG
TGCTCGTGTTGTTTGTGACAGTGGTGATGTGTTTATGACTTGTAACTATG
ACCCTGTTGGTAATTATGTTGGTGAAAGGCCGTATTGATGTCTTGTATTG
GTACCATATATGAATTGGGAATTGGGGGTATATATGTGGACACATGGTAT
TGNTACATGGTATGGTGTAATAAATATGTAGGTTAATTAGCA
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