FC921026

Overview
NameFC921026
Unique NameFC921026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921026 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 87/161 (54.04%), Postives = 110/161 (68.32%), Query Frame = 2 
Query:  131 GHRHIWKYSSLQRKNLIKNKRGFICSYTAEKDLNL----QLNDARVIYGVAPALGHNQELHPESHLRVPAIVSALEKMELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESXXXXXXXXXXXDSVV 601
            G R+I K +  ++  L  +     CS++ EK+  L    QL DAR+IY V+ ALGHN+E HPE   RVPAIV+ALE  ELT +FRGS+I+EL NF  A+V+DIA+VH +AYV GLEKAMD AS  G+I IEGSGPTYAT+TTFQ+S           DSV+
Sbjct:   20 GSRNICKKNQWRKYLLKPSGSSINCSFSTEKNPLLPSIQQLADARLIYSVSAALGHNKESHPECSARVPAIVNALEMNELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYATSTTFQDSLIAAGAGMALVDSVI 180
The following BLAST results are available for this feature:
BLAST of FC921026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HDA14_ARATH2.832e-3854.04Histone deacetylase 14 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC32202B10EF RVDevelopN Citrus clementina cDNA clone C32202B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921026 ID=FC921026; Name=FC921026; organism=Citrus clementina; type=EST; length=706bp
GGATCAGTCGCTAAATGGAGCTCCAATGTTAAAACCTCCGACTTTTCCTG
GGAATCTGTTTTCTTTGATGAGCCATCATGTGCGCCAGTGGAAAAGTCAC
AATCAGTTTAATTTCGATACTAAATTGTTGGGGCATAGACATATCTGGAA
GTATTCAAGTTTGCAGAGAAAAAACTTAATAAAAAACAAAAGAGGTTTCA
TTTGTTCATATACTGCAGAAAAGGATCTAAATTTACAGCTAAATGATGCG
CGAGTGATTTATGGTGTAGCTCCTGCTCTGGGCCACAACCAGGAGTTGCA
TCCAGAATCCCATCTTAGAGTTCCTGCAATTGTGAGTGCTCTTGAAAAGA
TGGAGCTTACGTCGGAGTTCCGTGGCTCAGAGATCATTGAACTTAAAAAT
TTTAGCCCCGCTTCAGTTGACGACATTGCAAGTGTTCATGCAAGAGCTTA
CGTATCAGGACTTGAAAAGGCCATGGATCGGGCTTCACAACAGGGCATTA
TTTTAATTGAAGGTTCTGGACCAACATATGCTACTGCAACTACATTCCAG
GAGTCACTTGCTGCAGCTGGAGCTGGAATTGCCTTACTTGATTCAGTGGT
GATGTCTTGACCTAGAATGCTAGTCTTTGTCAAAATATTTGAGTTGATAA
TGCTGATATTGTTTCGATTTCACAGCATGCGATACCTGTGTCTACATTGT
GATTTA
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