FC921063

Overview
NameFC921063
Unique NameFC921063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.075e-69
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGKT GMGA RKLK+HRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG IPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.834e-69
Identity = 129/133 (96.99%), Postives = 129/133 (96.99%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGKTRGMGA RKLK HRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG IPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 127/133 (95.49%), Postives = 127/133 (95.49%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG IPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.098e-65
Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGKTRGMGAGRKLK  R TQRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVG IPGVRFKVVKVSGVSLLALF
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK RG+   RKLK HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVG IPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALY 134          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.587e-57
Identity = 105/134 (78.36%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK +G+ A RKLKTHR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVG IPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.685e-57
Identity = 106/134 (79.10%), Postives = 116/134 (86.57%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK RG+   RK ++HRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVG IPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.037e-56
Identity = 102/134 (76.12%), Postives = 116/134 (86.57%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK +G+   RKLKTHR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVG IPGVRFK+VKV+  SL+ALF
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALF 134          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 104/134 (77.61%), Postives = 115/134 (85.82%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK RG+   RK   HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVG IPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
BLAST of FC921063 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 3.966e-56
Identity = 105/134 (78.36%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   88 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGHIPGVRFKVVKVSGVSLLALF 486
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVG IPGVRFKVVKV+ VSLLAL+
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 134          
The following BLAST results are available for this feature:
BLAST of FC921063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_EUPES1.075e-6996.9940S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS23_FRAAN1.834e-6996.9940S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS232_ARATH1.716e-6795.4940S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH2.098e-6593.9840S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU5.534e-5880.6040S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_BRUMA3.587e-5778.3640S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_DERVA4.685e-5779.1040S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_CAEEL3.037e-5676.1240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR3.966e-5677.6140S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT3.966e-5678.3640S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32202F09EF RVDevelopN Citrus clementina cDNA clone C32202F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921063 ID=FC921063; Name=FC921063; organism=Citrus clementina; type=EST; length=710bp
GAGGGTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTCTACA
CAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAGACAC
GTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGG
TGGGCTGATAAGTCGTACAAAAAGTCTCACCTCGGCAATGAGTGGAAGAA
GCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAG
GTATTGAAGCTAAGCAGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTT
CAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGG
TTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTTG
GACGTAAGGGACATGCGGTCGGACATATTCCCGGTGTCAGGTTCAAGGTT
GTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGGA
GGAGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTG
ATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTGGATT
TTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGTACA
ATTTTGACTCTAGAATTGATATTTGGTTAATCAGTTCNAATGGCTGTCAT
TCTTCTCTTA
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