FC921071
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_RAT (Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588 S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K +R E K ++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L P P Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588 S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K +R E K ++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L P P Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588 S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K +R E K ++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L P P Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588 S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K +R E K ++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L P P Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588 S ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE K +R E K ++RDLS+ + KS NS+F+G+VVAKLPF P + +SHR L GDD TDCS FLY LC++SIR N+QK LG +P R A AGG L P P Sbjct: 2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_DICDI (Transmembrane and coiled-coil domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25 Identity = 59/174 (33.91%), Postives = 94/174 (54.02%), Query Frame = 1 Query: 67 LTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM--KIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFP 582 L ++ +S +++ E +SWLL+YRT +YK K++ID+ +L+ + + + +++E K ++++LS K KS N +F+G VV KLPF P G + +SHR + GDD TDCSM F+Y +CS+ IR N+Q LG +PP+ A P Sbjct: 7 LFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKKGNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPIGFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKTKQANPWALP 180 The following BLAST results are available for this feature:
BLAST of FC921071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921071 ID=FC921071; Name=FC921071; organism=Citrus clementina; type=EST; length=689bpback to top |