FC921071

Overview
NameFC921071
Unique NameFC921071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4135 contig Ccv1_Contig4135:2..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_RAT (Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588
            S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K                 +R E   K ++RDLS+ + KS               NS+F+G+VVAKLPF P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L P P
Sbjct:    2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182          
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588
            S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K                 +R E   K ++RDLS+ + KS               NS+F+G+VVAKLPF P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L P P
Sbjct:    2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182          
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588
            S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K                 +R E   K ++RDLS+ + KS               NS+F+G+VVAKLPF P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L P P
Sbjct:    2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182          
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588
            S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K                 +R E   K ++RDLS+ + KS               NS+F+G+VVAKLPF P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L P P
Sbjct:    2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182          
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1
Query:   46 SLKYSDSLTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETMKIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAA--AGGGLFPMP 588
            S  ++D+L +V IS CTA++ E I+W+L+YRT+ YK LK+ ++K SKKLE  K                 +R E   K ++RDLS+ + KS               NS+F+G+VVAKLPF P   +  +SHR L GDD TDCS  FLY LC++SIR N+QK LG +P R A   AGG L P P
Sbjct:    2 STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK--ETITESAGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182          
BLAST of FC921071 vs. ExPASy Swiss-Prot
Match: TMCO1_DICDI (Transmembrane and coiled-coil domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 59/174 (33.91%), Postives = 94/174 (54.02%), Query Frame = 1
Query:   67 LTVVGISFCTAIICESISWLLIYRTNSYKTLKSSIDKASKKLETM--KIENPAXXXXXXXXXXXXDRVETSPKESSRDLSLFKFKSXXXXXXXXXXXXXXXNSLFEGKVVAKLPFKPFGIVMKMSHRGLQGDDATDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAAGGGLFP 582
            L ++ +S  +++  E +SWLL+YRT +YK  K++ID+   +L+ +  +    +            +++E   K ++++LS  K KS               N +F+G VV KLPF P G +  +SHR + GDD TDCSM F+Y +CS+ IR N+Q  LG +PP+   A     P
Sbjct:    7 LFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKKGNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPIGFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKTKQANPWALP 180          
The following BLAST results are available for this feature:
BLAST of FC921071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TMCO1_RAT1.478e-3644.26Transmembrane and coiled-coil domains protein 1 OS... [more]
TMCO1_PONAB1.478e-3644.26Transmembrane and coiled-coil domain-containing pr... [more]
TMCO1_MOUSE1.478e-3644.26Transmembrane and coiled-coil domain-containing pr... [more]
TMCO1_HUMAN1.478e-3644.26Transmembrane and coiled-coil domain-containing pr... [more]
TMCO1_BOVIN1.478e-3644.26Transmembrane and coiled-coil domain-containing pr... [more]
TMCO1_DICDI9.935e-2533.91Transmembrane and coiled-coil domain-containing pr... [more]
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Properties
Property NameValue
Genbank descriptionC32202G06EF RVDevelopN Citrus clementina cDNA clone C32202G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921071 ID=FC921071; Name=FC921071; organism=Citrus clementina; type=EST; length=689bp
GGCTTCGCAAAAATTGCAGCAATGGCGACGCCCCAAATGCTCTCATCACT
AAAATACTCAGACAGCTTAACTGTGGTGGGCATCTCTTTTTGCACAGCCA
TCATTTGCGAATCAATCTCATGGCTTCTCATTTACCGAACTAACTCTTAC
AAAACCCTCAAATCCTCTATCGACAAAGCCTCCAAGAAACTCGAGACCAT
GAAAATCGAAAACCCAGCTAAAATCTCCACCAAGAAGTCCAAGACCAAAA
AGATCGACCGCGTCGAGACCAGCCCCAAAGAATCCAGCCGCGACTTGTCC
TTGTTCAAGTTCAAATCCGGCGCCGTTGTCGCCCTCGTTCTGTTCGTCGT
GTTCGGCCTCTTGAATTCCTTGTTCGAAGGGAAAGTTGTTGCGAAATTAC
CGTTCAAGCCCTTTGGGATTGTCATGAAGATGAGCCATCGCGGGTTGCAG
GGCGACGATGCGACGGATTGTTCGATGGCGTTTTTGTATTTTTTGTGCTC
TATTAGTATTCGGACTAATTTACAGAAGTTTCTAGGGTTTTCTCCACCAC
GTGGCGCCGCTGCTGGTGGTGGATTGTTCCCGATGCCTGATCCCAAGACC
AATTGATCGGGCAATAGGATGCTTGCATACTGCTTTTGGGCGTGTTTCCA
TTCAGCTAGGGATTATTCATCAAGTGGAGTAAGCTGGAT
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