FC921078

Overview
NameFC921078
Unique NameFC921078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9828 contig Ccv1_Contig9828:3..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.172e-58
Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   69 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.704e-58
Identity = 120/139 (86.33%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   69 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.319e-58
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 3
Query:   75 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.838e-57
Identity = 115/139 (82.73%), Postives = 122/139 (87.77%), Query Frame = 3
Query:   69 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.986e-57
Identity = 117/139 (84.17%), Postives = 120/139 (86.33%), Query Frame = 3
Query:   69 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 9.124e-57
Identity = 114/139 (82.01%), Postives = 122/139 (87.77%), Query Frame = 3
Query:   69 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLS RETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.181e-52
Identity = 106/135 (78.52%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   81 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLS RET+ R+TGGMKVKADRDESSPYAAMLAAQDV+Q+CKELGITALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIPTDST
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.507e-51
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   69 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLS +ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.507e-51
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   69 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLS +ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of FC921078 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 1.507e-51
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 3
Query:   69 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLS-RETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 482
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLS +ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
The following BLAST results are available for this feature:
BLAST of FC921078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
RS143_ARATH2.172e-5883.4540S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE3.704e-5886.3340S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE6.319e-5886.1340S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_ARATH1.838e-5782.7340S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS14_LUPLU6.986e-5784.1740S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_ARATH9.124e-5782.0140S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE5.181e-5278.5240S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_MOUSE1.507e-5176.4340S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN1.507e-5176.4340S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR1.507e-5176.4340S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32202H01EF RVDevelopN Citrus clementina cDNA clone C32202H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921078 ID=FC921078; Name=FC921078; organism=Citrus clementina; type=EST; length=516bp
GAGTCTGACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTC
TCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGA
GGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTG
GCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACT
GACTTGTCAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAA
AGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAG
ATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAG
CTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCA
GTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAG
AGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAGA
AGGGGTAGAAGGTTGT
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