FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14249 contig Ccv1_Contig14249:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_HAHCH (Pseudouridine-5'-phosphate glycosidase OS=Hahella chejuensis (strain KCTC 2396) GN=psuG PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.659e-54
Identity = 110/171 (64.33%), Postives = 129/171 (75.44%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            ISPEV  AL+ G  VVALESTIISHGMP+PQN ETA +VE IVR+NGAVPATIAI++G   VGLS EE+E L K G    K +RRDI  ++A  G+GATTV++TM  A+M G+ VF TGGIGGVHR  + T DIS+DL EL  T VAV+ AG KSILD+  T EYLETHGV
Sbjct:    7 ISPEVQTALAAGEPVVALESTIISHGMPWPQNAETALQVEQIVRDNGAVPATIAIIKGRLKVGLSKEEIEYLGKAGLNVTKASRRDIPFIIARGGDGATTVASTMILAAMAGVKVFATGGIGGVHRGAQETFDISADLQELAHTNVAVICAGAKSILDLGLTREYLETHGV 177          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SORC5 (Pseudouridine-5'-phosphate glycosidase OS=Sorangium cellulosum (strain So ce56) GN=psuG PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.670e-53
Identity = 111/178 (62.36%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  134 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            K+ + IS EV +AL+ G  VVALESTII+HGMPYPQN E  + VEA+VR NGAVPATIAI++G   VG+  E+LERLA+ G KA K +RRD+A ++   G   TTV+ TM  A+  GI VF TGGIGGVHR  E T DIS+DL EL +T VAVV AG KSILDIP+TLE LETHGV V
Sbjct:    4 KDHLSISSEVRKALAGGRPVVALESTIITHGMPYPQNLEMVRRVEAVVRRNGAVPATIAIMDGKLRVGVKGEDLERLARGGGKAAKASRRDVAALLVLGGMAGTTVATTMMAAAWAGIQVFATGGIGGVHRGAETTFDISADLEELSQTQVAVVCAGAKSILDIPKTLETLETHGVPV 181          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_CHLSY (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=psuG PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.261e-53
Identity = 105/176 (59.66%), Postives = 131/176 (74.43%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +++I+ EV+ AL  G AVVALEST+ISHG+PYP N   A+ +EA VR  GAVPATI ++EG+P +GL+  ELERLA  G + +K +RRDI   +    +GATTV+ATM  A+  GI VF TGGIGGVHR   H+ D+S+DLTELGRTPV VV AG K+ILD+P TLEYLET GV V
Sbjct:    1 MLRIAEEVTTALEEGRAVVALESTLISHGLPYPHNLAVAEGLEAEVRAAGAVPATIGLIEGVPVIGLNGNELERLAVGGDRVRKLSRRDIGAAIVDHADGATTVAATMALAAAAGIEVFATGGIGGVHRGATHSWDVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPV 176          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG2_PHOLL (Pseudouridine-5'-phosphate glycosidase 2 OS=Photorhabdus luminescens subsp. laumondii GN=psuG2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.261e-53
Identity = 106/179 (59.22%), Postives = 132/179 (73.74%), Query Frame = 2
Query:  125 SLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            +++   + ISPEV+EAL +   VVALESTII+HGMPYPQN +TA +VE  +R NGAVPATIA++ G+   GLS EE+  LA+ G +  K +RRD+  V+A   NGATTV++TM  A+M GI +F TGGIGGVHR  E T DIS+DL EL +T VAVV AG KSILD+  T EYLETHGV
Sbjct:    5 AISNKYLDISPEVTEALENNRPVVALESTIIAHGMPYPQNVKTALQVEQKIRENGAVPATIAVINGMMKAGLSHEEIAFLARKGDEITKVSRRDLPFVIAAGKNGATTVASTMIIAAMAGIRIFATGGIGGVHRGAEQTFDISADLQELAKTSVAVVCAGAKSILDLGLTTEYLETHGV 183          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ECOLI (Pseudouridine-5'-phosphate glycosidase OS=Escherichia coli (strain K12) GN=psuG PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.922e-52
Identity = 108/178 (60.67%), Postives = 129/178 (72.47%), Query Frame = 2
Query:  128 LAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            ++  L++ISPEV +AL +   VVALESTIISHGMP+PQN +TA EVE  +R  GAVPATIAI+ G+  VGLS EE+E L + G    K +RRD+  VVA   NGATTV++TM  A++ GI VF TGGIGGVHR  EHT DIS+DL EL  T V VV AG KSILD+  T EYLET GV
Sbjct:    6 ISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGV 183          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: YOW5_SCHPO (Pseudouridine-metabolizing bifunctional protein C1861.05 OS=Schizosaccharomyces pombe GN=SPBC1861.05 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.542e-51
Identity = 110/173 (63.58%), Postives = 130/173 (75.14%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +S EV+EAL +   VVALESTII+HGMPYPQN E A +VE+ VR+ GAVPATIA+L G   +GL   +L  LAK G  A K +RRD+++V + R NG TTV+ATM  A   GI VF TGGIGGVHR  E++MDIS+DL ELGRT VAVVSAG+KSILDI RTLE LET GV V
Sbjct:   43 LSKEVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSGETAYKVSRRDLSYVASQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSILDIGRTLEVLETQGVPV 215          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_STAAW (Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) GN=psuG PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.542e-51
Identity = 107/175 (61.14%), Postives = 131/175 (74.86%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++ S EV +AL +   +VALESTIISHGMPYPQN E A  VE I+RNNGA+PATIAI++G   +GL +E+LE LA     A K +RRD+A VVA +  GATTV+ TM  A+M GI  FVTGGIGGVH+  EHTMDIS+DL EL +T V V+ AG KSILD+P+T+EYLET GV V
Sbjct:    8 IEYSREVQQALENNQPIVALESTIISHGMPYPQNVEMATTVEQIIRNNGAIPATIAIIDGKIKIGLESEDLEILATSKDVA-KVSRRDLAEVVAMKCVGATTVATTMICAAMAGIQFFVTGGIGGVHKGAEHTMDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPV 181          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_CLOBL (Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=psuG PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.653e-51
Identity = 108/180 (60.00%), Postives = 132/180 (73.33%), Query Frame = 2
Query:  128 LAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + +  ++IS EVSEAL     VVALESTIISHGMPYP+N ETA  VE I+R+ GA+PATIAIL G   VGL+ +E+E L K G +  KT+RRDI  ++A + +GATTV++TM  A++ GI VF TGGIGGVHR  + + DIS+DL EL  T VAVV AG KSILDI  TLEYLET GV V
Sbjct:    1 MLEKYLEISKEVSEALKENKPVVALESTIISHGMPYPKNAETALNVEKIIRDKGAIPATIAILNGKLKVGLTKDEIEYLGKKGKEVVKTSRRDIPFILAKKLDGATTVASTMIVANLAGIKVFGTGGIGGVHRGAQESFDISADLQELANTNVAVVCAGAKSILDIGLTLEYLETQGVPV 180          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_LYSSC (Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.705e-50
Identity = 106/178 (59.55%), Postives = 131/178 (73.60%), Query Frame = 2
Query:  134 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            K  + +S EV    + G  +VALESTIISHGMPYPQN +TA+EVE I+R+NGAVPATIA+++G   +GLS EELE        A K +RRD+ +++AT+  GATTV+ATM  A + GI +FVTGGIGGVHR  E TMD+S+DL EL +T VAV+ AG KSILDI  TLEYLET GV V
Sbjct:    2 KEFIVLSEEVKAGQAKGLPIVALESTIISHGMPYPQNVQTAREVEQIIRDNGAVPATIALIDGKIKIGLSDEELEMFGNAQGVA-KASRRDLGYLLATKKLGATTVAATMICAELAGIEIFVTGGIGGVHRGAETTMDVSADLEELAQTNVAVICAGAKSILDIGLTLEYLETKGVPV 178          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_BREBN (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.705e-50
Identity = 108/178 (60.67%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  134 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            K  +  + EV  AL +   VVALE+TIISHGMPYPQN E AKEVE I+R+NGAVPATI I++G   +GL+  ELE  A       K +RRD A+++A+   GATTV+ATM  A M GI +F TGGIGGVHR GE T D+S+DLTEL +T VAVV AG KSILDI RTLEYLET GV V
Sbjct:    2 KQYLTFTEEVRHALENNLPVVALETTIISHGMPYPQNIEMAKEVEQIIRDNGAVPATIGIMDGKIKIGLTDSELEEFAT-NKNVAKVSRRDFAYILASGKIGATTVAATMIAAEMAGIHMFATGGIGGVHREGEITWDVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPV 178          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_HAHCH9.659e-5464.33Pseudouridine-5'-phosphate glycosidase OS=Hahella ... [more]
PSUG_SORC53.670e-5362.36Pseudouridine-5'-phosphate glycosidase OS=Sorangiu... [more]
PSUG_CHLSY6.261e-5359.66Pseudouridine-5'-phosphate glycosidase OS=Chlorofl... [more]
PSUG2_PHOLL6.261e-5359.22Pseudouridine-5'-phosphate glycosidase 2 OS=Photor... [more]
PSUG_ECOLI6.922e-5260.67Pseudouridine-5'-phosphate glycosidase OS=Escheric... [more]
YOW5_SCHPO1.542e-5163.58Pseudouridine-metabolizing bifunctional protein C1... [more]
PSUG_STAAW1.542e-5161.14Pseudouridine-5'-phosphate glycosidase OS=Staphylo... [more]
PSUG_CLOBL7.653e-5160.00Pseudouridine-5'-phosphate glycosidase OS=Clostrid... [more]
PSUG_LYSSC1.705e-5059.55Pseudouridine-5'-phosphate glycosidase OS=Lysiniba... [more]
PSUG_BREBN1.705e-5060.67Pseudouridine-5'-phosphate glycosidase OS=Brevibac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
back to top