FC921136

Overview
NameFC921136
Unique NameFC921136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14251 contig Ccv1_Contig14251:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.436e-72
Identity = 143/230 (62.17%), Postives = 164/230 (71.30%), Query Frame = 2
Query:   47 MSLRNSCLSRRISRSF----GEAHKSSKETELNAADDSVVSSTTSAPMDXXXXXXXXXXXXXXLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAKPSAAGVVDDFAA 724
            M L  S LSRRIS SF    GE   + +   +    +   SS+ SA                 +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D SQGSNAYVGKL SDFLG NFT+YDS+PPHNGAKPS       FA+
Sbjct:    1 MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSA-----------------MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFAS 213          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.034e-59
Identity = 107/160 (66.88%), Postives = 132/160 (82.50%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAKPSAA 700
            LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFPS LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H+EYI+SLDA DLSQGSNAY+GKL SDF G NF IYDS+PP++GAK S++
Sbjct:   37 LLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDFWGTNFKIYDSKPPYDGAKASSS 196          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 106/167 (63.47%), Postives = 129/167 (77.25%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAKPSAAGVVDDFAA 724
            LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH+EYIIS D  DL  GSN+YVGKL SDFLG  F IYDS+PP++GAKPS +     FA+
Sbjct:   55 LLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGAKPSRSQSSRRFAS 221          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.137e-53
Identity = 99/159 (62.26%), Postives = 126/159 (79.25%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAKPSA 697
            LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS LKQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H+EY+ISLDA DLSQGSNAYVGKL SDF G NF IYD++PP++ AK S+
Sbjct:   27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSS 185          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.542e-47
Identity = 87/154 (56.49%), Postives = 118/154 (76.62%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGA 685
            L PELL E++ R+E +E  WP R++VVACA VC+ WR ITK+IV+ P  SGK+TFP  LKQPGPR+   +C IRRN+ T T+YLY+ LT + ++ GKFLLAAR+ R+   ++Y+ISLD  D+S+GSN Y+GKL S+FLG  FT+YD+ PP++GA
Sbjct:   55 LPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGA 208          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.296e-46
Identity = 87/153 (56.86%), Postives = 118/153 (77.12%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHN 679
            L PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP  LKQPGPR+   QC I+R+K   T+YLYL L+P+  SE GKFLLAA+R RR   +EYIIS+D+ ++S+ SN YVGK+ S+FLG  F +YD++PP+N
Sbjct:   62 LPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYN 214          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.724e-46
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAK 688
            L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H EY I++++  L  GS + VG L S+F G  FTI D +PP+ GAK
Sbjct:   54 LVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAK 208          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.538e-45
Identity = 85/153 (55.56%), Postives = 115/153 (75.16%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNG 682
            L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ RR   +EY+ISLD  D+S+ +++YVGKL S+FLG  FTIYD+ PP+ G
Sbjct:   58 LPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAG 210          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.645e-45
Identity = 85/154 (55.19%), Postives = 115/154 (74.68%), Query Frame = 2
Query:  230 PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGAK 688
            PELL +++ R+E +ED+WP R+NVV+CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL L  + S + GKFLLAA+R+RR   ++YIISL+  D+S+GSN Y+GKL S+FLG  FT+YD++P + G +
Sbjct:   57 PELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQ 210          
BLAST of FC921136 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.149e-44
Identity = 84/155 (54.19%), Postives = 118/155 (76.13%), Query Frame = 2
Query:  224 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGDNFTIYDSRPPHNGA 685
            L PELL ++IRR+E +E +WP R++VV+CA VCK WRE+ K+IV SP   GK+TFP  LKQPGPR+   QC I+R+K  ST++LYL L T   ++ GKFLL+A+R+R+   +EY+IS+DA ++S+ S+ Y+GKL S+FLG  F IYD++P +NGA
Sbjct:   62 LPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGA 216          
The following BLAST results are available for this feature:
BLAST of FC921136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP7_ARATH2.436e-7262.17Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP1_ORYSJ4.034e-5966.88Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP9_ORYSJ1.298e-5763.47Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP10_ORYSJ1.137e-5362.26Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP6_ORYSJ3.542e-4756.49Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ2.296e-4656.86Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP2_ORYSJ8.724e-4656.13Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP11_ORYSJ2.538e-4555.56Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP3_ARATH9.645e-4555.19Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP8_ORYSJ2.149e-4454.19Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC32101E08EF RVDevelopN Citrus clementina cDNA clone C32101E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921136 ID=FC921136; Name=FC921136; organism=Citrus clementina; type=EST; length=735bp
GAGGGAATCAAAAGCCAAAATCAAAAGAAGAAGCGGGTGGGCGAAAATGT
CTCTGAGAAATTCGTGTCTCTCTCGAAGGATCTCGAGATCGTTCGGAGAG
GCACACAAATCTTCGAAAGAGACCGAACTCAATGCCGCTGACGACTCGGT
CGTGTCGTCGACCACGTCGGCGCCGATGGATTCCGGCGCCGCCGCTGCCC
ACTCCTCCGGGTCATGGGCCGGGTTGCTGCCCGAATTGCTAGGGGAGATC
ATAAGGCGCGTGGAGACCACAGAAGATAGCTGGCCCCATCGCCAAAACGT
TGTCGCTTGTGCTTGCGTTTGTAAGAGATGGAGGGAAATTACCAAAGATA
TCGTCAAGTCTCCTTTTCTTAGTGGCAAAATTACCTTCCCTTCTTGCCTT
AAACAGCCGGGTCCACGCGAGTTCCCTCATCAATGTCTAATAAGGCGGAA
TAAGAAGACCTCAACGTTCTACCTCTATCTTGCACTTACCCCATCATTTA
GCGAAAAGGGGAAGTTTCTTTTAGCAGCTCGGAGATATAGACGTGGTGCA
CACAGTGAGTATATCATATCTCTTGATGCTGGTGATCTTTCTCAAGGGAG
TAATGCATATGTTGGCAAATTAAGTTCTGATTTCCTTGGGGACAACTTTA
CAATTTACGACAGTCGGCCGCCTCACAATGGTGCNAAACCCTCAGCAGCA
GGGGTAGTCGACGATTTTGCAGCAGCAATAAGCCC
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