FC921141

Overview
NameFC921141
Unique NameFC921141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12761 contig Ccv1_Contig12761:585..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.728e-79
Identity = 134/246 (54.47%), Postives = 182/246 (73.98%), Query Frame = 2
Query:    2 SAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            +AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ ++ GLK+QA+MSFHQCGGNVGD V+IPLPKWV++  + D D+ YT++ G+RN EY+S+G D  P+  GRT ++ YSD+M++F++   DLL  + I++I+VG+GPAGELRYPSYP+  G W+FPGIG FQCYDKY+  S KAAA  AG  EW    P DAG YN+ PE T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F
Sbjct:   45 AAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLLKSEVIIDIEVGLGPAGELRYPSYPQNQG-WQFPGIGEFQCYDKYLRESFKAAAAKAGHSEWEL--PDDAGTYNDVPESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAF 286          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.554e-77
Identity = 134/245 (54.69%), Postives = 175/245 (71.43%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AGV+GVM+DVWWG++E   P  Y+W  Y  L ++  R GLK+QA+MSFHQCGGNVGD V+IP+P+WV +  D D D+ YT++ G R+ EY+S+G D +P+  GRT VQ YSD+M +FK+   DL+    IV+I+VG+GPAGELRYPSYP+  G W FPGIG FQCYDKY+    K AA  AG PEW    P DAG YN+ PE+T FF+K+ G + S  G+FF++WYS  L+ HG++IL  A  IF
Sbjct:   48 AGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEVGLGPAGELRYPSYPQSQG-WVFPGIGEFQCYDKYLKKDFKEAAAKAGHPEWDL--PEDAGEYNDKPEETGFFKKD-GTYVSEKGKFFMTWYSNKLIFHGDQILGEANKIF 288          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.430e-77
Identity = 134/245 (54.69%), Postives = 174/245 (71.02%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV +   +D D+ YTD  G RN EY++LG D  P+  GR+ VQ Y+D+M +F++  KD L    IV+I+VG+GPAGE+RYPSYP+ +G W FPGIG F CYDKY+ +  KAAA + G PEW    P D G YN+ PE TQFFR +NG + S  G FFL+WYS  L+ HG+ IL  A  +F
Sbjct:   43 AGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDVGQYNDTPERTQFFR-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVF 283          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.655e-76
Identity = 133/245 (54.29%), Postives = 175/245 (71.43%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV +   +D D+ YTD  G RN EY++LG D  P+  GR+ VQ Y+D+M +F++  K+ L    IV+I+VG+GPAGE+RYPSYP+ +G W FPGIG F CYDKY+ +  KAAA + G PEW    P DAG YN+ PE TQFFR +NG + +  G FFL+WYS  L+ HG+ IL  A  +F
Sbjct:   43 AGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDAGQYNDTPERTQFFR-DNGTYLTEKGRFFLAWYSNNLIKHGDRILDEANKVF 283          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.816e-76
Identity = 129/245 (52.65%), Postives = 177/245 (72.24%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+IP+P+WV++  + D D+ YT++ G R+ EY+++G D  P+  GRT ++ YSD+M++F++   D L  + I++I+VG+GPAGELRYPSYP+  G W FPGIG FQCYDKY+ +  KAAA  AG  EW    P DAG YN+ PE T+FF K NG + +  G+FFL+WYS  LL+HG+EIL  A   F
Sbjct:   46 AGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQNQG-WVFPGIGEFQCYDKYLKAEFKAAAARAGHSEWEL--PDDAGTYNDVPESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDEILDEANKAF 286          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.830e-75
Identity = 134/245 (54.69%), Postives = 173/245 (70.61%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AGV+GVM+DVWWGLVE   P  Y+W  Y  + ++    GLK+QA+MSFHQCGGNVGD V+IP+P+WV +    D D+ YT++ G RN EY++LG D  P+  GRT VQ Y+D+M +F++  K  L   TIV+I+VG+GPAGE+RYPSYP+  G W FPGIG F CYDKY+ +  KAAA  AG PEW    P DAG YN+ PE TQFF K+NG + +  G+FFLSWYS  L+ HG++IL  A  +F
Sbjct:   43 AGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFLDAGTIVDIEVGLGPAGEMRYPSYPQSQG-WVFPGIGEFICYDKYLEADFKAAAAKAGHPEWEL--PDDAGEYNDTPEKTQFF-KDNGTYLTEKGKFFLSWYSNKLIKHGDKILDEANKVF 283          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.121e-75
Identity = 127/246 (51.63%), Postives = 178/246 (72.36%), Query Frame = 2
Query:    2 SAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            +AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+IP+P+WV++  + D D+ YT++ G R+ EY+++G D  P+  GRT ++ YSD+M++F++   + L  + I++I+VG+GPAGELRYPSYP+  G W FPGIG FQCYDKY+ +  KAAA  AG  EW    P DAG YN+ PE T+FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F
Sbjct:   45 AAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEVGLGPAGELRYPSYPQNQG-WVFPGIGEFQCYDKYLKADFKAAAAKAGHSEWEL--PDDAGTYNDIPESTEFF-KTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAF 286          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.713e-73
Identity = 126/246 (51.22%), Postives = 174/246 (70.73%), Query Frame = 2
Query:    2 SAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            +AGV+GVM+DVWWG++E   P  Y+W  Y  L ++ +  GL +QA+MSFHQCGGNVGD V+IP+P+WV++  + + D+ YT++ G RN EY+++G D  P+  GRT ++ YSD+M++F++   D L    I++I+VG+GPAGELRYPSYP+  G W+FP IG FQCYDKY+ +  KAA   AG PEW    P DAG YN+ PE T FF K NG + +  G+FFL+WYS  LL+HG++IL  A   F
Sbjct:   45 AAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAF 286          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.450e-72
Identity = 125/245 (51.02%), Postives = 173/245 (70.61%), Query Frame = 2
Query:    5 AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            AG +GVM+DVWWGLVE  +PG Y+W  Y  + ++ +  GLK+QA+MS HQCGGNVGD V+IP+P+WV +    + D+ YT++ G+ N EY++LG D  P+  GRT +Q Y+D+M++F++   D L    +V+I+VG+GPAGE+RYPSYP+  G W FPG+G F CYDKY+ +  KAAAE AG PEW      DAG YN+ PE TQFF  +NG + +  G+FFL+WYS  L+ HG++IL  A  +F
Sbjct:   43 AGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFLDAGVVVDIEVGLGPAGEMRYPSYPQSQG-WVFPGVGEFICYDKYLQADFKAAAEEAGHPEWDLL--DDAGTYNDTPEKTQFF-ADNGTYQTDKGKFFLTWYSNKLIKHGDKILDEANKVF 283          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 271.937 bits (694), Expect = 2.473e-72
Identity = 127/247 (51.42%), Postives = 174/247 (70.45%), Query Frame = 2
Query:    2 SAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL--GDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIF 736
            + G +GVM+DVWWG++E   P  Y+W  Y +L ++ K+ GLK+QA+MSFHQCGGNVGD+V IP+P+W+++  DK+ D+ YT++ G RN EY+SLG D   + +GRT ++ Y DFM +F+D   D L  GD IV+I+VG G AGELRYPSYPE  G W FPGIG FQCYDKYM++  K A + AG  +W   G   AG YN+ P+ T+FFR  NG + +  G+FFL+WYS  L+ HG+++L  A  +F
Sbjct:   46 AGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGD-IVDIEVGCGAAGELRYPSYPETQG-WVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTPDKTEFFR-PNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVF 288          
The following BLAST results are available for this feature:
BLAST of FC921141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_MEDSA2.728e-7954.47Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH2.554e-7754.69Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_HORVU7.430e-7754.69Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP1.655e-7654.29Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_VIGUN4.816e-7652.65Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT1.830e-7554.69Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP3.121e-7551.63Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN1.713e-7351.22Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE1.450e-7251.02Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_IPOBA2.473e-7251.42Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionC32101F02EF RVDevelopN Citrus clementina cDNA clone C32101F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921141 ID=FC921141; Name=FC921141; organism=Citrus clementina; type=EST; length=741bp
GAGCGCGGGAGTGGAAGGAGTTATGATGGACGTGTGGTGGGGCCTGGTCG
AGAGGGACCAGCCCGGCCATTACAATTGGGGTGGCTATTCTGACTTGCTC
GAAATGGCCAAACGACACGGCCTCAAGGTTCAGGCCGTCATGTCGTTTCA
CCAGTGCGGCGGCAACGTCGGTGATTCCGTCTCTATCCCTTTACCCAAGT
GGGTTGTAGAAGAAGTTGACAAAGACCAAGATCTTGTGTACACTGATCAA
TGGGGGATGAGGAATTACGAGTACATTTCACTAGGTTGTGATACCATTCC
GGTCCTGAAAGGTCGAACGCCTGTCCAGTGTTACTCTGACTTCATGCGTG
CCTTCAAAGACAAGTTCAAGGACCTTCTTGGTGACACCATTGTGGAAATC
CAAGTGGGAATGGGTCCAGCTGGTGAGCTGCGTTACCCTTCGTATCCAGA
GCAGAATGGGACATGGAAATTCCCAGGAATTGGAGCTTTCCAGTGTTATG
ATAAGTATATGCTCAGTAGCTTAAAAGCAGCAGCTGAATCTGCTGGTAAG
CCAGAATGGGGCAGCACAGGCCCTACTGATGCTGGACATTACAACAACTG
GCCAGAAGATACACAGTTTTTCCGAAAAGAAAATGGTGGTTGGTGTAGCC
CTTATGGTGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCTTAGATCAC
GGAGAAGAGATTCTCGCATCTGCCAAGTCAATTTTCGATGC
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