FC921155 | Citrus Genome Database

Overview


Name	FC921155
Unique Name	FC921155
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	689

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10997	contig	Ccv1_Contig10997:346..1034.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 82/218 (37.61%), Postives = 111/218 (50.92%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG +SD YGRR  +    + T   G+LSAFAP Y                     + + EF+P  +R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P  +  I   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 82/218 (37.61%), Postives = 110/218 (50.46%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 82/218 (37.61%), Postives = 110/218 (50.46%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 82/218 (37.61%), Postives = 110/218 (50.46%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 81/218 (37.16%), Postives = 109/218 (50.00%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P  +  +   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 81/218 (37.16%), Postives = 108/218 (49.54%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +      T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P  V  +   ++PES RY    G    A   L+ IA  N   +P G L
Sbjct:   77 IGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKL 294

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 72/220 (32.73%), Postives = 116/220 (52.73%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNLTS 670
            +GFG+FQ      +G+ W ++AME+M+LS + PA+  EWG        +TT VF+GM++ +  WG I D +GRR  +    LV  + G++S  +P++                     + + EF+P + R K +V+  +FW  G+V EA LA+ VM    WR L+ LS++P  +  +   ++PES R+    G    A   L+  A+ N+  LP+G L S
Sbjct:   76 LGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVS 295

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 68/218 (31.19%), Postives = 111/218 (50.92%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++F+P+Y                         EF+P   RG  + +   FW  GS+   ++A +V+P + WRWL+ +++IP  +L++   F+PES R+  + G    A N LE IA+ N++ +P G L
Sbjct:   41 IGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQL 258

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 67/218 (30.73%), Postives = 109/218 (50.00%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++FAP+Y                         EF+P   RG  + +   FW  GS+    LA +++P + WRWL+ +++IP  +L++   F+PES R+  + G    A   LE +A+ N++ +P G L
Sbjct:   41 IGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKL 258

[Close]

BLAST of FC921155 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 69/218 (31.65%), Postives = 103/218 (47.25%), Query Frame = 2

Query:   11 MGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILE*IAQFNQTSLPSGNL 664
            +GFG F  L     G     EAME+M+L+ V P ++ EW         ++T+VF G +V     G I+D YGR   + GG +       L++F+ +Y                    F    EF+P   R   + + S FW  GS+    L   V+P + WRW++  S IP+ VL+   +F+PES R+  + G I  A + L+ IA+ N   LP G L
Sbjct:   58 IGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMNNGVLPEGEL 275

The following BLAST results are available for this feature:

BLAST of FC921155 vs. ExPASy Swiss-Prot

BLAST of FC921155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46


Match Name	E-value	Identity	Description
SVOP_XENLA	4.753e-35	37.61	Synaptic vesicle 2-related protein OS=Xenopus laev...	[more]
SVOP_PONAB	1.059e-34	37.61	Synaptic vesicle 2-related protein OS=Pongo abelii...	[more]
SVOP_HUMAN	1.059e-34	37.61	Synaptic vesicle 2-related protein OS=Homo sapiens...	[more]
SVOP_BOVIN	1.059e-34	37.61	Synaptic vesicle 2-related protein OS=Bos taurus G...	[more]
SVOP_MOUSE	1.171e-33	37.16	Synaptic vesicle 2-related protein OS=Mus musculus...	[more]
SVOP_RAT	1.529e-33	37.16	Synaptic vesicle 2-related protein OS=Rattus norve...	[more]
YOU1_CAEEL	3.407e-33	32.73	Putative transporter ZK637.1 OS=Caenorhabditis ele...	[more]
SVOPL_MOUSE	2.139e-27	31.19	Putative transporter SVOPL OS=Mus musculus GN=Svop...	[more]
SVOPL_HUMAN	1.386e-26	30.73	Putative transporter SVOPL OS=Homo sapiens GN=SVOP...	[more]
SVOPL_DANRE	1.811e-26	31.65	Putative transporter SVOPL OS=Danio rerio GN=svopl...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32101G06EF RVDevelopN Citrus clementina cDNA clone C32101G06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921155 ID=FC921155; Name=FC921155; organism=Citrus clementina; type=EST; length=689bp
CACTTCATTCATGGGGTTTGGGAAGTTCCAAGGTCTCGCGCTTGCTTATT
CTGGGCTCGGTTGGTTTTCAGAAGCAATGGAGGTTATGATTCTCTCCTTT
GTGGGACCTGCAGTGAAGTCTGAGTGGGGATTGTCCTCAAGTGAAGAGAG
CCTTATAACAACTGTTGTTTTTGCTGGAATGTTAGTTGGCGCATATTCAT
GGGGCCTTATATCTGACATATATGGAAGAAGGATGAGTATCCTTGGTGGA
GCTTTAGTGACTTTTGTAGCTGGGTTATTAAGTGCTTTTGCCCCTAACTA
CATATCATTGTTGATTCTTCGTGGTTTGGCTGGTGCTGGCCTGGGCAGTG
GGCATGTCTTCTTCTCCTGGTTTATGGAATTTGTTCCTCCTTCAAATCGA
GGAAAGTGGATGGTCGTCTTTTCAACTTTCTGGACATTTGGGTCGGTTTC
TGAGGCTGCACTTGCTTGGATCGTCATGCCAATATTGACTTGGAGGTGGC
TACTTGCTTTGTCTGCAATACCTGCATTTGTTCTGCTTATTTTTATTGTT
TTCATGCCAGAGTCTCCAAGATATCTATGTACAAAAGGTAGAATAACTGA
TGCGCATAATATTCTGGAATAAATAGCTCAATTCAACCAAACAAGCCTCC
CTTCTGGCAACCTTACTTCTGATGGAACAATGATCTGGA