FC921188

Overview
NameFC921188
Unique NameFC921188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.878e-42
Identity = 90/220 (40.91%), Postives = 136/220 (61.82%), Query Frame = 2
Query:   56 MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHSTCGSSQSCPQSTYSQSLP 715
            M+  VS  P+    +++ K+  R  A+F P+IWGD+FL+      ++G    +HQ+LK+E+R M+ A +   +Q KL  ID +QRLGVSYHF  EI++ L+ ++  N D +        +LY  SL+FRLLR++GY +S DVFN FKD  GNFKS +  D++G+L LY+A++LRVHGE+IL+EA++FT  HL      + H          + +  + LP
Sbjct:    1 MASQVSQMPSSS-PLSSNKDEIRPKADFQPSIWGDFFLNCPDKNIDAGTEK-RHQQLKEEVRKMIVAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVSSLDHPLSEEVSHALKQSIRRGLP 210          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41
Identity = 90/220 (40.91%), Postives = 134/220 (60.91%), Query Frame = 2
Query:   56 MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHSTCGSSQSCPQSTYSQSLP 715
            M+  VS  P+    +++ K+  R  A+F P+IWGD FL+   D     +   +HQ+LK+E+R M+ A +   +Q KL  ID +QRLGVSYHF  EI++ L+ ++  N D +        +LY  S++FRLLR++GY +S DVFN FKD  GNFKS +  D+RG+L LY+A++LRVHGE+IL+EA++FT  HL      + H          + +  + LP
Sbjct:    1 MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCP-DKNIDAETEKRHQQLKEEVRKMIVAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLP 210          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.710e-41
Identity = 87/192 (45.31%), Postives = 127/192 (66.15%), Query Frame = 2
Query:   56 MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHL 631
            M+  VS  P+    +++ K+  R  A+F P+IWGD FL+   D     +   +HQ+LK+E+R M+ A +   +Q KL  ID +QRLGVSYHF  EI++ L+ ++  N D +        +LY  SL+FRLLR++G+ +S DVFN FKD  GNFKS +  D+RG+L LY+A++LRVHGE+IL+EA++FT  HL
Sbjct:    1 MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCP-DKNIDAETEKRHQQLKEEVRKMIVAPMANSTQ-KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTNHL 182          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.534e-40
Identity = 89/220 (40.45%), Postives = 133/220 (60.45%), Query Frame = 2
Query:   56 MSFPVSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQHSTCGSSQSCPQSTYSQSLP 715
            M+  VS  P+    +++ K+  R  A+F P+IWGD+FL+   D     +   +HQ+LK+E+R M+ A +   S  KL  ID +Q LGVSYHF  EI++ L+ ++  N D +        +LY  SL+FRLLR++G+ +S DVFN FKD  GNFKS +  D+RG+L LY+A++LRVHGE+IL+EA++FT  HL      + H          + +  + LP
Sbjct:    1 MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDFFLNCP-DKNIDAETQKRHQQLKEEVRKMIVAPMAN-STLKLAFIDSVQGLGVSYHFTKEIEDELENIYHNNNDAE-------NDLYTTSLRFRLLREHGFHVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTSNHLSLAVASLDHPLSEEVSHALKQSIRRGLP 210          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 4.473e-37
Identity = 82/199 (41.21%), Postives = 126/199 (63.32%), Query Frame = 2
Query:  101 NAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES----FTKPIQHSTCGSSQSC 685
            N E+E  R  A+F P++WGD FLS++   + +   + + + LK++ R ML A   K + T L+LID I+RLG+SYHFE EID+IL +++  N +C+        +L   +LQFRLLRQ+G+ IS ++F+ F+D NG FK  L  D+ G+L+LYEA+H+R H ++IL +AL F+  HLES       P++     + + C
Sbjct:    8 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT-LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN--------DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQC 197          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.879e-35
Identity = 82/197 (41.62%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   68 VSASPNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTKPIQH 658
            V ASP+  I         R  A+F P IWGD F+    D        ++++ELK ++R M+   ++  +Q KL  ID +QRLGVSYHFE EI++ L+ ++    + D   D     LY  +L+FRLLR++G+ IS D FN FKD  GNFK+ L  D++G+L LYEA+++RVHGE+IL+EA++FT   L      + H
Sbjct:    8 VLASPHPAI-----SSENRPKADFHPGIWGDMFI-ICPDTDIDAATELQYEELKAQVRKMIMEPVDDSNQ-KLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADTD-----LYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKASLTSDVQGLLELYEASYMRVHGEDILDEAISFTTAQLTLALPTLHH 192          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.896e-34
Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 2
Query:   95 RINAEKESTRRSANFDPTIWG-DYFLSYTGDFKESGDASVKH-QELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTK 646
            +++   +  RRSAN+ P+IW  DY  S   ++   G+   +    LK+++R ML   +N   Q  L+LI+ +QRLG+SYHFE EI  IL  ++  +     GD    + LY  +L+FRLLRQ+GY +S +VFNSFKD  G+FK+ L  D +GMLSLYEA+   + GENIL EA  F+  HLE + K
Sbjct:   48 KVSTSPDILRRSANYQPSIWNHDYIESLRIEYV--GETCTRQINVLKEQVRMMLHKVVNPLEQ--LELIEILQRLGLSYHFEEEIKRILDGVYNNDHG---GDTWKAENLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYVK 226          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 82/182 (45.05%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  107 EKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQ--TKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTK 646
            E++  R  ANF P+IWGD FL Y    ++  +  V   +LKKE+R +L+  ++ P +    L LID+IQRLG+ YHFE EID  LQ ++E   D   GD          SL FRL+R+ GY ++ DVFN++KD NG FK  L  D+ G+L LYEA  +RV GE IL +AL FT + L   TK
Sbjct:    5 EEKPIRPIANFPPSIWGDQFLIYEKQVEQGVEQIVN--DLKKEVRQLLKEALDIPMKHANLLKLIDEIQRLGIPYHFEREIDHALQCIYETYGDNWNGDRS--------SLWFRLMRKQGYYVTCDVFNNYKDKNGAFKQSLANDVEGLLELYEATSMRVPGEIILEDALGFTRSRLSIMTK 176          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.297e-33
Identity = 78/186 (41.94%), Postives = 117/186 (62.90%), Query Frame = 2
Query:   80 PNKVIRINAEKESTRRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTKLDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLES 637
            P +    +   +  R  A F PT+WG+ F S T +  E      +   LKK+++ +L +  +   +T + LID + RLGVSYHFE++I+E+L K+  +  D     DE   +LY  ++ FR+ RQ+G+K+S+DVF+ FKDS+G FK  L+ D +GMLSL+EA+HL VHGE+IL EA  FT  +L+S
Sbjct:   50 PTQACLSSTTHQEVRPLAYFPPTVWGNRFASLTFNPSEFESYDERVIVLKKKVKDILISSTSDSVETVI-LIDLLCRLGVSYHFENDIEELLSKIFNSQPDLV---DEKECDLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKDYLQS 231          
BLAST of FC921188 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32
Identity = 79/189 (41.80%), Postives = 120/189 (63.49%), Query Frame = 2
Query:  122 RRSANFDPTIWGDYFLSYTGDFKESGDASVKHQELKKEIRTMLRADINKPSQTK--LDLIDDIQRLGVSYHFESEIDEILQKMHEANQDCDLGDDENVQELYYISLQFRLLRQNGYKISADVFNSFKDSNGNFKSFLKRDIRGMLSLYEAAHLRVHGENILNEALTFTVTHLESFTK-PIQHSTCGSSQ 679
            R +ANF   IWGD FL+Y  D +E  +  +K  +LK+E+++ L   +N P+Q    L  ID I+RLG++Y+FE EI+++ Q M+ A  D   G +         SL FRL+RQ+G+ +S+D+F+++KD  G FK  L++D+ G+L LYEAA++ V GE IL++AL FT T L+   K P   ++  SSQ
Sbjct:   10 RPNANFPSEIWGDQFLAYDQDEQEGVEQVIK--DLKEEVKSELLTALNSPTQHTELLKFIDAIERLGIAYYFEEEINQVFQHMYTAYGDKWTGGNT--------SLWFRLMRQHGFFVSSDIFSTYKDKEGRFKESLEKDVHGLLELYEAAYMFVPGEGILDDALVFTRTCLDEIAKNPSLSNSAVSSQ 188          
The following BLAST results are available for this feature:
BLAST of FC921188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCS4_GOSAR7.878e-4240.91(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSAR2.292e-4140.91(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR8.710e-4145.31(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS1_GOSHI2.534e-4040.45(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
5EAS_TOBAC4.473e-3741.21Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
DCS3_GOSAR1.879e-3541.62(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
MYRS_QUEIL7.896e-3443.55Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
AMS1_ARTAN1.759e-3345.05Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
CASS_RICCO2.297e-3341.94Casbene synthase, chloroplastic OS=Ricinus communi... [more]
ECS1_ARTAN1.489e-3241.80Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32102B11EF RVDevelopN Citrus clementina cDNA clone C32102B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921188 ID=FC921188; Name=FC921188; organism=Citrus clementina; type=EST; length=746bp
GAACTCAATTTGTAGCAACCTTAAATGCCTTTAGCAAGCAATAGAAATTA
AGGACATGTCGTTTCCGGTTTCAGCCTCTCCTAATAAAGTTATCCGAATA
AATGCAGAGAAAGAATCTACTCGTCGTTCGGCAAATTTTGATCCTACCAT
TTGGGGGGATTATTTCCTTTCATATACTGGTGACTTCAAGGAAAGTGGTG
ATGCTAGCGTGAAGCATCAAGAGCTGAAGAAAGAAATTAGAACGATGCTA
AGAGCTGATATCAACAAGCCTTCGCAGACTAAACTGGATTTGATTGATGA
CATTCAGCGTTTAGGAGTGTCTTATCATTTTGAAAGTGAGATTGATGAAA
TCTTGCAAAAAATGCATGAGGCTAACCAAGATTGTGATCTTGGCGATGAT
GAAAATGTTCAGGAGCTCTATTATATCTCTCTTCAGTTTCGATTACTTAG
ACAAAATGGCTATAAAATTTCTGCTGATGTCTTTAACAGCTTCAAGGATA
GCAATGGGAACTTCAAGTCTTTCCTTAAAAGAGATATTCGGGGAATGTTA
AGCCTGTATGAAGCGGCACATCTCAGGGTACATGGAGAAAATATACTCAA
CGAAGCACTTACTTTCACTGTCACTCACCTTGAGTCATTTACAAAGCCAA
TCCAACACTCAACTTGCGGCTCAAGTCAATCGTGCCCTCAATCGACCTAT
TCGCAAAGCTTACCAGGCTAGAGGCAAAACACTACATGCCATCTAT
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