FC921191

Overview
NameFC921191
Unique NameFC921191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14262 contig Ccv1_Contig14262:1..488. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPL 119
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPL 119
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPL 119
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPL 119
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPL 121
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PL
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPL 121
[Close]
BLAST of FC921191 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:  121 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDN--FDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPL 486
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ ++ R  PL
Sbjct:    1 MTLFHFGNCFSLAYFPYFITYKCSGLSEYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELIMSRCIPL 121
The following BLAST results are available for this feature:
BLAST of FC921191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_RAT8.354e-1433.61Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE8.354e-1433.61Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN8.354e-1433.61Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN8.354e-1433.61Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
TM147_XENTR9.236e-1333.06Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA9.236e-1333.06Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE1.575e-1232.26Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
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Properties
Property NameValue
Genbank descriptionC32102C03EF RVDevelopN Citrus clementina cDNA clone C32102C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921191 ID=FC921191; Name=FC921191; organism=Citrus clementina; type=EST; length=488bp
GGGGATAAAATAAAAATAAAATCTAAGGGACTGACTTGCGAGCTTGAACT
CTCTCGCTTCCTACTTGTTGTTGGATCACCACAGCGGTTTCCGTGGCGGA
GAGAGGAAGGTTAGGTAAAGATGACGGTTTTTCATTTCTTCAACTGTGCG
ATTCTGACTTTCGGCCCTCACGCAGTCTACTACTCCGCCACGCCCTTATC
CGAGTATGATACACTTGGTACCTCTGTGAAAGCGGCTCTCGTTTATCTCG
GCACAGCTCTTGTTAAGCTTGTTTGCTTAGCGACGTTTCTTAAGGTATCG
GAGAATGATAACTTCGATCCATATCAGGAACTGTTGAAAGCATTGATCGG
TTTTATAGATGTTGCTGGGCTTTACTTTGCCTTAACCCAGTTGACTCACA
GGAACATTTCTCAGAATCATAAATTTCAAGCTGTTGGACTGGGGTGGGCT
TTTGCTGATTCTGTTCTACATAGATTGGCTCCACTTTG
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