FC921193

Overview
NameFC921193
Unique NameFC921193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14263 contig Ccv1_Contig14263:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921193 vs. ExPASy Swiss-Prot
Match: ZIP6_ARATH (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:  121 AGCVVDTR---RALECRNGEAAAHLKXXXXXXXXXXXXXXXXLPVVLARYLQGKPSYDKATLIIKCFAAGVILSTSLVHVLPDAFDALSDCQVASKHPWRDFPFXXXXXXXXXXXXXXXDITASAHV 492
            A CV  T    RA  CR+GE A+HLK                 PV+LA+Y  GKP YDKA L+IKCFAAGVILSTSLVHVLP+AF++L+DCQV+S+HPW+DFPF               D+TAS H+
Sbjct:    2 ASCVTGTEAAIRAAACRDGEEASHLKIVAVFAIFLTSVFGVWGPVLLAKYFHGKPLYDKAILVIKCFAAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITALLVDLTASEHM 128
The following BLAST results are available for this feature:
BLAST of FC921193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZIP6_ARATH1.109e-2951.97Zinc transporter 6, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32102C05EF RVDevelopN Citrus clementina cDNA clone C32102C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921193 ID=FC921193; Name=FC921193; organism=Citrus clementina; type=EST; length=721bp
GATAAATTCAAAGACTCCTCCCTATCTAGCTCCTGCAACAAAAAGTCCAA
ATCCCAAATTCAGTTTCATCAATTTTCTTTTAAGGTTAATTATATATCCC
TCGTCCCTATGGCTGCTGGTGCTGGGTGTGTCGTGGATACAAGGCGTGCC
CTGGAGTGCAGAAACGGTGAAGCAGCTGCTCACTTGAAGTTTGTTTCAGT
CTTTATAATCTTCTTTACAAGCGTAATAGGAGTATCTTTGCCTGTCGTGT
TGGCTCGGTACTTACAAGGCAAGCCCAGTTATGATAAAGCAACCTTGATA
ATCAAGTGCTTCGCAGCTGGTGTGATTCTCTCAACTTCTCTTGTCCACGT
GCTCCCTGATGCTTTTGATGCTCTCTCTGACTGCCAAGTGGCGTCCAAGC
ATCCTTGGAGAGACTTCCCCTTCGCAGGTTTGGTTACTTTGATTGGTGCT
TTGCTGGCTTTGTTAGTTGACATAACTGCAAGTGCACACGTGGAGCATGG
CCATGGTCATGGCCATAACAACAACGACAATAAAGAAAGTAAAAATTACG
TGCTTGTTGGGACGCAAGAGGAAATTGAAGGAATCAAAAAGGGAAATTAT
GAATTGGGAAAATTGGAAACTGGCCACGGTGAAAGGACAACAGAGAAACG
GATCAAGAGGAAATTGATAAAGCTAAGCAGAAGCTGGTGTCACAAGTTTT
GGAGATGGGATATTGTCCATC
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