FC921233

Overview
NameFC921233
Unique NameFC921233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX7_MOUSE (Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 70/227 (30.84%), Postives = 110/227 (48.46%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYF-----------------KKKPADLMQIFKDVQS---------KVSDVVLGKEKPVEESNPEYEKLKHYIF-----ELETTWLKLRTCISSCQRHRE 709
            L ++V  P      ++ +I+YR++TKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A  E +   + Q  G                   K +P + M++   +++         K+S  +  +E+   +   EY  + H ++     EL  T   +  CI  C +  E
Sbjct:   32 LFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAEELSSYKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIETFSQKINLIDKISQRIYKEERDYFDEMKEYGPI-HILWSASEEELVDTLKGMAGCIEQCCKATE 257          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX30_XENTR (Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 74/193 (38.34%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQR 700
            L V+V DP K    ++ YI+YRV TKT   E+  PE  + RRY DF WLR++L E     FIPPLPEK  V+    RFS EF+E RR+ LD F+ RIA HP L  +E    FL A          +D    KK+   L+    +    V+     + +PV     E+  +  Y   L+T  LKL T     QR
Sbjct:  100 LFVTVDDPKKHVCTMETYITYRVSTKTTRTEFDLPEYSIRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA----------KDLNSHKKQGITLLSKMGESVRYVTSGYKLRNRPV-----EFATITDY---LDTFQLKLGTIDRIAQR 274          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX7_MACFA (Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 613
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX7_HUMAN (Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 613
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_RAT (Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 64/204 (31.37%), Postives = 110/204 (53.92%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F    +K +D V      + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQALSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_MOUSE (Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 64/204 (31.37%), Postives = 110/204 (53.92%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F    +K +D V      + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQALSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_MACFA (Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 64/204 (31.37%), Postives = 110/204 (53.92%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F    +K +D V      + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_HUMAN (Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 64/204 (31.37%), Postives = 110/204 (53.92%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F    +K +D V      + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_BOVIN (Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 63/204 (30.88%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++     V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +     + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIN----MNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
BLAST of FC921233 vs. ExPASy Swiss-Prot
Match: SNX1_PONAB (Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.380e-21
Identity = 64/204 (31.37%), Postives = 109/204 (53.43%), Query Frame = 2
Query:  128 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELETTWLKLRTCISSCQRHRE 709
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L ++F    +K +D V      + ES+  +E+    +   E    KL   + +   HR+
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYIQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLPKMF----NKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338          
The following BLAST results are available for this feature:
BLAST of FC921233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX7_MOUSE5.111e-2230.84Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1[more]
SNX30_XENTR3.313e-2138.34Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE... [more]
SNX7_MACFA4.326e-2137.20Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=... [more]
SNX7_HUMAN4.326e-2137.20Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1[more]
SNX1_RAT4.326e-2131.37Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 ... [more]
SNX1_MOUSE4.326e-2131.37Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1[more]
SNX1_MACFA4.326e-2131.37Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=... [more]
SNX1_HUMAN4.326e-2131.37Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3[more]
SNX1_BOVIN5.650e-2130.88Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1[more]
SNX1_PONAB7.380e-2131.37Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32102F11EF RVDevelopN Citrus clementina cDNA clone C32102F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921233 ID=FC921233; Name=FC921233; organism=Citrus clementina; type=EST; length=730bp
GAATCCTTCTTCTTCCGTTCTTCGGTTCCATTCTCTAGTTCCCAATTAGA
TCATGATTAACACGGAGCAGCAGAGAAGCGCATCCGGATCGTCGCAGAGC
CCTAGATCCCCGTCATCGCAGCCGTATTTATCGGTGTCAGTAACCGATCC
CGTGAAATTAGGCAATGGAGTACAAGCTTACATTTCCTATCGAGTCATCA
CCAAGACAAATTTTCCTGAATATCAAGGCCCCGAGAAGATTGTTATTCGC
CGTTACAGTGATTTTGTCTGGTTACGTGATCGACTTTTTGAGAAGTACAA
GGGCATTTTCATTCCCCCTCTTCCTGAGAAGAGTGCCGTAGAGAAGTTTC
GTTTCAGTGCTGAATTTATTGAGATGAGACGCCAAGGATTGGATTTGTTT
GTCAATCGGATTGCTTCACATCCTGAGCTGCAGCAAAGTGAGGATTTAAA
AACATTTTTGCAGGCAGACGAAGAGACAATGGAGAGATTAAGGTCTCAAG
ACACTGGTTATTTCAAAAAGAAGCCAGCTGATTTGATGCAAATCTTCAAG
GATGTACAATCTAAAGTGAGTGATGTTGTTCTTGGAAAAGAGAAGCCAGT
TGAAGAATCTAATCCTGAATACGAGAAGCTGAAACACTACATTTTTGAGC
TTGAAACCACTTGGCTGAAGCTCAGAACATGCATATCGTCTTGTCAAAGA
CATAGAGAGTTGGGGAATCTCTATCTGATT
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