FC921244

Overview
NameFC921244
Unique NameFC921244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10201 contig Ccv1_Contig10201:6..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.621e-66
Identity = 131/205 (63.90%), Postives = 148/205 (72.20%), Query Frame = 2
Query:   74 LTMAAQSYTTIPLYSKITNXXXXXXXXXXXXXXXTAK---HLRTTQSTSLPRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            + MA   Y +  + SK TN               T      L T QS +L  +  +AA+ +++E               L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE IR NL +LLGADP
Sbjct:    1 MAMATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKI--LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADP 203          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.881e-66
Identity = 128/166 (77.11%), Postives = 139/166 (83.73%), Query Frame = 2
Query:  191 RTTQSTSL---PRISVSAAATSSIEVXXXXXXXXXXXXXXLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            R  +S SL   P  SVSAA+++   V              LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+LLGADP
Sbjct:   36 RPKKSLSLSCRPSASVSAASSA---VDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADP 198          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 66/126 (52.38%), Postives = 91/126 (72.22%), Query Frame = 2
Query:  302 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++ +   ++ELL   P
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSP 349          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_ACIBL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidobacteria bacterium (strain Ellin345) GN=ispF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            RVG GFD H    G PL IGG+ +PH  G   HSDGDVLLH + DA+LGA+   DIG  FP SDPKWKGA S VFI+EA+R ++ AGY +GN+D +L+L  PK+ P+ + I+ ++++LL  +P
Sbjct:    3 RVGLGFDSHEFREGIPLRIGGLTIPHTHGLSGHSDGDVLLHAITDALLGAVAAGDIGAFFPPSDPKWKGANSVVFIEEAMRHIETAGYRVGNVDCSLVLNAPKIGPHAKAIQESVAKLLKIEP 125          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.955e-34
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  311 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 670
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+   +  NL+E LG
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 679
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E ++  ++ELL A+P
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEP 125          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACWK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.948e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACHK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=ispF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.948e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACCZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.948e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of FC921244 vs. ExPASy Swiss-Prot
Match: ISPF_BACCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.948e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  308 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 667
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
The following BLAST results are available for this feature:
BLAST of FC921244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CATRO4.621e-6663.902-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ARATH7.881e-6677.112-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH1.110e-3552.38Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_ACIBL4.664e-3452.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALME7.955e-3455.832-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC1.772e-3351.612-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACWK3.948e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACHK3.948e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCZ3.948e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCR3.948e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32102G10EF RVDevelopN Citrus clementina cDNA clone C32102G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921244 ID=FC921244; Name=FC921244; organism=Citrus clementina; type=EST; length=748bp
TTTGGCTGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCC
TCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACC
ACCATTCCTCTCTACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCC
GTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACAC
AGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCC
ATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATC
ACTGCCCTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTG
GCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGC
GAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAAT
TTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTG
ATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTG
AGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCT
GATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCA
ACTTGTCTGAACTGCTAGGAGCAGACCCACCGTTGTAATCTGAAGCGAAA
CTCATGAAAAAGTGATAGCCTGGTGAAATCGAGTATGCACTCAACGTG
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