FC921258

Overview
NameFC921258
Unique NameFC921258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:155..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN10_ARATH (Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75680 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.914e-58
Identity = 112/192 (58.33%), Postives = 137/192 (71.35%), Query Frame = 3
Query:  168 MGEKSKSKGCFGWFXXXXXXXXXXGAIVYTIK---KKTSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKRLKHD*ERHSLS 734
            M EKSKS+G  GWF           A+VYT+K   KK+   D            +KKYA+ALK+A+QFFD+QKSGKL NNKI WRGDS LKDG +  LDL+KG+YDAGDH+KFGFPMAFTATVLSW+ILEYGDQM+ V+QL PA+DSL+WITDYLI AHP +NVL + VG+P  DH   +R +   E+  L+
Sbjct:    1 MEEKSKSRGWCGWFIAIIVLASVILAVVYTVKLRTKKSGDDDGGGPVPGPPGAIDKKYADALKLALQFFDIQKSGKLENNKIPWRGDSGLKDGSEDNLDLSKGLYDAGDHIKFGFPMAFTATVLSWSILEYGDQMNAVNQLDPAKDSLRWITDYLIKAHPSDNVLYIQVGDPKVDHPCWERPEDMKEKRPLT 192          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN24_ORYSJ (Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.002e-51
Identity = 99/179 (55.31%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  180 SKSKGCFGWFXXXXXXXXXXGAIVYTIKKK-----TSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            SK+KGC GW            A V  I KK     +    K           + KY +AL VA+QFF VQK+GKL NN+I WRGDSAL DG+  GLDL+KGMYDAGDH+KF FPMAFTATVLSW+ILEYGDQM    QL PA D+L+WITD+L++AHP +NV  + VG+PD DHN  +R
Sbjct:    3 SKTKGCCGWLIVALVASLVATAAVVAIMKKKVGGGSGRKLKPLPVPGPPGAIDSKYGDALGVALQFFQVQKAGKLENNQIPWRGDSALDDGKPAGLDLSKGMYDAGDHIKFSFPMAFTATVLSWSILEYGDQMSATKQLDPALDALRWITDFLVNAHPSDNVFYIQVGDPDLDHNCWER 181          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN2_ARATH (Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g19940 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.011e-49
Identity = 94/153 (61.44%), Postives = 116/153 (75.82%), Query Frame = 3
Query:  243 AIVYTIKKKTSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            A+++TI+ +++HSD             K YA ALK+AMQFFD+QKSGKL NN+ISWRGDS LKDG +  +DL+KG+YDAGDHMKFGFPMAFTATVLSW+ILEYGDQM  ++ L  A+DSLKW TD+LI+AHP  NVL + VG+P  DH    R
Sbjct:   27 AVIFTIRHRSNHSDDDGSNV-------KNYANALKIAMQFFDIQKSGKLENNEISWRGDSGLKDGSEASIDLSKGLYDAGDHMKFGFPMAFTATVLSWSILEYGDQMASLNLLDHAKDSLKWTTDFLINAHPSPNVLYIQVGDPVTDHKCWDR 172          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN18_ORYSJ (Endoglucanase 18 OS=Oryza sativa subsp. japonica GN=Os06g0715300 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.976e-46
Identity = 86/138 (62.32%), Postives = 107/138 (77.54%), Query Frame = 3
Query:  321 EKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKRLKHD*ERHSLS 734
            + KYA+AL VA+QFF VQKSGKLVNN I WRGDSAL DG++ G+DL+KGMYDAGDHMKFGFPMAFTAT+LSW++LEYGD M   DQ   A D+L WI DYL++AHP ++VL + VG+P  DH   +R +   E+  L+
Sbjct:   47 DHKYADALAVALQFFQVQKSGKLVNNTIHWRGDSALDDGKEAGIDLSKGMYDAGDHMKFGFPMAFTATMLSWSVLEYGDAMRAADQRDSAIDALNWIMDYLVNAHPSDDVLYIQVGDPKADHKCWERPEKMKEKRPLT 184          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN4_THEFU (Endoglucanase E-4 OS=Thermomonospora fusca GN=celD PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDH 686
            YAEAL+ +M F++ Q+SGKL  NN++SWRGDS L DG D+GLDLT G YDAGDH+KFGFPMAFTAT+L+W  +E  +      Q+   +D+L+W+ DY I AHP  NVL V VG+ D DH
Sbjct:   52 YAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADH 171          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN12_ARATH (Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44540 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 66/125 (52.80%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            YAEAL+ ++ +F+ Q+SGKL  N K++WRGDSALKDG D  +DLT G YDAGD+MKFGFP+AFT T+L+W+ +E G ++    +   +  +LKW TDYLI AHP+ NVL   VG  + DH    R
Sbjct:   34 YAEALQKSLLYFEAQRSGKLPPNQKVTWRGDSALKDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMGSELRAHHEQGNSLRALKWATDYLIKAHPQPNVLYGQVGEGNSDHKCWMR 158          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN13_ARATH (Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44550 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 66/125 (52.80%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            YAEALK ++ +F+ Q+SGKL  N +++WRGDSAL+DG D  +DLT G YDAGD+MKFGFP+AFT T+L+W+ +E   Q+    +   A  +LKW TDYLI AHP+ NVL   VG  + DH    R
Sbjct:   34 YAEALKNSLLYFEAQRSGKLPPNQRVTWRGDSALRDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMASQLRAHHEKGNALRALKWATDYLIKAHPQPNVLYGQVGEGNSDHKCWMR 158          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN5_ORYSJ (Endoglucanase 5 OS=Oryza sativa subsp. japonica GN=Os02g0151300 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y EAL  ++ +F+ Q+SG+L  N ++ WRG S L DG + G+DL  G YDAGDH+KFG PMAFT T+LSW++LEYG+++    +L  A  ++KW TDY I AH   NVL   VG+ D DH   +R
Sbjct:   30 YGEALSKSLLYFEAQRSGRLPYNQRVRWRGHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSVLEYGEEIAAAGELGHALHAIKWGTDYFIKAHTHPNVLWTQVGDGDSDHYCWQR 154          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN15_ORYSJ (Endoglucanase 15 OS=Oryza sativa subsp. japonica GN=Os05g0212300 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 64/125 (51.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            YA AL+ ++ +F  Q+SG L  N ++SWR  S L DG+  G+DL  G YDAGD++KFG PMAFT T++SW+ILEYG QM    +L+ A D++KW TDY I AHP+ +VL   VG+ D DH+  +R
Sbjct:   35 YAMALRKSILYFQAQRSGVLPPNQRVSWRASSGLFDGKANGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSILEYGKQMAAAGELRNAMDAVKWGTDYFIKAHPEPDVLYGEVGDGDTDHSCWQR 159          
BLAST of FC921258 vs. ExPASy Swiss-Prot
Match: GUN7_ORYSJ (Endoglucanase 7 OS=Oryza sativa subsp. japonica GN=GLU10 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 60/125 (48.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  330 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVXVGNPDKDHNVGKR 701
            Y +AL+ ++ +F+ Q+SG+L +N +++WR  S L DG + G+DL  G YDAGDH+KFG PMAFT T+LSW+++EYGD ++   +L  A +++KW TDY I AH K N L   VG+ D DH   +R
Sbjct:   37 YEDALRKSLLYFEAQRSGRLPHNQRVAWRDHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSMIEYGDDVEAAGELGHALEAIKWGTDYFIKAHTKPNELWAEVGDGDTDHYCWQR 161          
The following BLAST results are available for this feature:
BLAST of FC921258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN10_ARATH5.914e-5858.33Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75... [more]
GUN24_ORYSJ7.002e-5155.31Endoglucanase 24 OS=Oryza sativa subsp. japonica G... [more]
GUN2_ARATH1.011e-4961.44Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g199... [more]
GUN18_ORYSJ3.976e-4662.32Endoglucanase 18 OS=Oryza sativa subsp. japonica G... [more]
GUN4_THEFU2.047e-3457.50Endoglucanase E-4 OS=Thermomonospora fusca GN=celD... [more]
GUN12_ARATH9.508e-3252.80Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN13_ARATH2.118e-3152.80Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN5_ORYSJ1.373e-3049.60Endoglucanase 5 OS=Oryza sativa subsp. japonica GN... [more]
GUN15_ORYSJ1.373e-3051.20Endoglucanase 15 OS=Oryza sativa subsp. japonica G... [more]
GUN7_ORYSJ3.059e-3048.00Endoglucanase 7 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32102H12EF RVDevelopN Citrus clementina cDNA clone C32102H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921258 ID=FC921258; Name=FC921258; organism=Citrus clementina; type=EST; length=742bp
GAGCCAAATTAAGCTCCTTACCACTCACATTTCACCCACTAGAGAGAAAT
ACGGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTAC
TCTCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTT
GACGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTC
GGATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGT
TTACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTC
CCGGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTC
GCAATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAA
GATATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTT
TGGATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGG
TTTCCGATGGCTTTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTA
TGGAGATCAGATGGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTC
TCAAGTGGATCACTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTC
CTTATTGTTCANGTGGGCAATCCTGATAAGGACCACAATGTTGGGAAAAG
ACTGAAGCATGACTGAGAGAGACACTCACTCAGTCACACATC
back to top