FC921286

Overview
NameFC921286
Unique NameFC921286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 87.0409 bits (214), Expect = 6.606e-17
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   95 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            +T+DEA+  +GFG+FQ+ + I  G+  +A+AME+M+LS I PA+  EW +S  Q+ L+T+ VF+G+++ S  WG I D +GR  G
Sbjct:   67 FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKG 151          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG ISD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG ISD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG ISD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG +SD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFG+FQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG ISD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRSCG 349
            E  N     + +++A+  +GFG+FQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTSVVF G++  S  WG ISD YGR  G
Sbjct:   59 EFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTG 152          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   95 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR 340
            YT++EA+  +GFG F IL+ +  G   + EAMEIM+L+ + P I+ EW+L   Q  L++++VF G +V     G+I+D YGR
Sbjct:   49 YTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVSTMVFFGFMVCGVLCGYIADKYGR 130          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 2
Query:   68 EMDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR 340
            E   +    +T+++A+  +GFG+F I + +  G   V EAMEIM+++ + P I+ EW L   Q   +T++VF G +V S  +G ++D YGR
Sbjct:   23 EPQQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGR 113          
BLAST of FC921286 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 2
Query:   95 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR 340
            +T+++A+  +GFG+F I + +  G   V EAMEIM+++ + P I+ EW L   Q  L+T++VF G +V S  +G ++D YGR
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGR 113          
The following BLAST results are available for this feature:
BLAST of FC921286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
YOU1_CAEEL6.606e-1744.71Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_PONAB1.922e-1644.68Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN1.922e-1644.68Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN1.922e-1644.68Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_XENLA4.282e-1643.62Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_RAT5.592e-1643.62Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE5.592e-1643.62Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOPL_DANRE6.836e-1442.68Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_MOUSE7.558e-1336.26Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]
SVOPL_HUMAN7.558e-1340.24Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
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Properties
Property NameValue
Genbank descriptionC32103C04EF RVDevelopN Citrus clementina cDNA clone C32103C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921286 ID=FC921286; Name=FC921286; organism=Citrus clementina; type=EST; length=559bp
GAATTGAAAGAATTTTTATTTCTTTTTTAACGGTTGCAGATTGCATATTG
TTCGGATTTGTTGTTCAGAAATGGATAATGAAGTTGTGCCTGTGTACACA
CTGGATGAAGCACTTAATCATGTGGGGTTCGGGAAATTCCAAATTCTTGT
TCTTATATATGCTGGACTGGGTTTGGTGGCTGAAGCTATGGAAATTATGA
TTTTGTCTTTCATTGGACCGGCAATTAAGTCTGAGTGGAACCTTTCACCA
GCTCAGGAAACCCTTTTGACCTCTGTTGTTTTTGCTGGACTGCTTGTTGG
TTCTTATTCTTGGGGTTTCATCTCAGATAACTACGGTAGAAGTTGTGGAC
AAGGCATTTGCAGCACCGGATGCAAAGAAGTTGATTTTTTCTGCTAGCTC
TTCTTGTTGAAGGAAACATTTTTCTCCCAGTTGTATGTATGTGTACACAC
CTTATTGAACACAAACAATTCATAATCCTCTGGACAGAGAGGCTGAGATG
TGCCTTTTATTGAAAAGCAAATAGGTTTTCAGCAAAAAAAAAAAAAAAAA
AAAAAAAAA
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