FC921295

Overview
NameFC921295
Unique NameFC921295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig935 contig Ccv1_Contig935:686..1349. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921295 vs. ExPASy Swiss-Prot
Match: B3GT9_ARATH (Probable beta-1,3-galactosyltransferase 9 OS=Arabidopsis thaliana GN=B3GALT9 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.078e-65
Identity = 103/152 (67.76%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   82 METLPMTTAKSSERRGRSKQIH--TSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLSNFLKKSMEQRPKVLTVEDKLMLLGCKDLERRIVEAEMDLTLAKSQGYLKNXXXXXXXXXXXXXXAVIGVYTGFGSHLNRNVYRGSWMPKGDALK 531
            ME+LP T    SERR RS +    +SKPSV++AFFSC+AWLYVAGRLWQDAENR +L+N LKKS +Q+PKVLTV+DKLM+LGCKDLERRIVE EM+LTLAKSQGYLKN              AVIGVY+GFGSHL RN +RGS+MP+GDAL+
Sbjct:    1 MESLPTTVPSKSERRARSSKFSQSSSKPSVIMAFFSCVAWLYVAGRLWQDAENRVVLNNILKKSYDQKPKVLTVDDKLMVLGCKDLERRIVETEMELTLAKSQGYLKN--LKSGSSSGKKLLAVIGVYSGFGSHLRRNTFRGSYMPQGDALR 150          

HSP 2 Score: 65.0846 bits (157), Expect = 3.078e-65
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  525 LKKLEERGVVIRFVIGRSANRGDSLDRKIDAEXRETKDFPDS*GHE 662
            L+KLEERG+VIRFVIGRS NRGDSLDRKID E +  KDF     HE
Sbjct:  149 LRKLEERGIVIRFVIGRSPNRGDSLDRKIDEENQARKDFLILENHE 194          
BLAST of FC921295 vs. ExPASy Swiss-Prot
Match: B3GTA_ARATH (Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 8.900e-65
Identity = 101/151 (66.89%), Postives = 116/151 (76.82%), Query Frame = 1
Query:   82 METLPMTTAKSSERRGR-SKQIHTSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLSNFLKKSMEQRPKVLTVEDKLMLLGCKDLERRIVEAEMDLTLAKSQGYLKNXXXXXXXXXXXXXXAVIGVYTGFGSHLNRNVYRGSWMPKGDALK 531
            ME+LP T +  S+RRGR SK  +TSKPS++LAFFSCLAWLYVAGRLWQDA+ R  L+  LK + +QRPKVLTVEDKL++LGCKDLERRIVE EM+L  AKSQGYLK               AVIGVYTGFGSHL RN +RGSWMP+ DALK
Sbjct:    1 MESLPTTVSGKSDRRGRFSKSQNTSKPSLILAFFSCLAWLYVAGRLWQDAQYRAALNTVLKMNYDQRPKVLTVEDKLVVLGCKDLERRIVETEMELAQAKSQGYLKK--QKSVSSSGKKMLAVIGVYTGFGSHLKRNKFRGSWMPRDDALK 149          

HSP 2 Score: 72.4034 bits (176), Expect = 8.900e-65
Identity = 38/46 (82.61%), Postives = 38/46 (82.61%), Query Frame = 3
Query:  525 LKKLEERGVVIRFVIGRSANRGDSLDRKIDAEXRETKDFPDS*GHE 662
            LKKLEERGVVIRFVIGRSANRGDSLDRKID E R TKDF     HE
Sbjct:  148 LKKLEERGVVIRFVIGRSANRGDSLDRKIDEENRATKDFLILENHE 193          
BLAST of FC921295 vs. ExPASy Swiss-Prot
Match: B3GTB_ARATH (Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.406e-26
Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  121 RRGRSKQIHTSKPSVVLAF-FSCLAWLYVAGRLWQDAENRTLLSNFLKKSMEQRPKVLTVEDKLMLLGCKDLERRIVEAEMDLTLAKSQGYL-KNXXXXXXXXXXXXXXAVIGVYTGFGSHLNRNVYRGSWMPKGDALKNSRKEE 549
            R+G S ++ +S+ S +L F F+  A  YVAGRLWQ+++ R  L N L +   Q    ++V+D L ++ C++ ++ +   EM+L+ A+ +G++ K+               VIG+ T  G+   R+  R +WM  G +LK    E+
Sbjct:    3 RKGSSIRLSSSRISTLLLFMFATFASFYVAGRLWQESQTRVHLINELDRVTGQGKSAISVDDTLKIIACREQKKTLAALEMELSSARQEGFVSKSPKLADGTETKKRPLVVIGIMTSLGNKKKRDAVRQAWMGTGASLKKLESEK 147          

HSP 2 Score: 55.8398 bits (133), Expect = 8.406e-26
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  525 LKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAEXRETKDF 641
            LKKLE E+GV+ RFVIGRSAN+GDS+D+ ID E  +T DF
Sbjct:  140 LKKLESEKGVIARFVIGRSANKGDSMDKSIDTENSQTDDF 179          
The following BLAST results are available for this feature:
BLAST of FC921295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
B3GT9_ARATH3.078e-6567.76Probable beta-1,3-galactosyltransferase 9 OS=Arabi... [more]
B3GTA_ARATH8.900e-6566.89Probable beta-1,3-galactosyltransferase 10 OS=Arab... [more]
B3GTB_ARATH8.406e-2631.03Probable beta-1,3-galactosyltransferase 11 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC32103D01EF RVDevelopN Citrus clementina cDNA clone C32103D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921295 ID=FC921295; Name=FC921295; organism=Citrus clementina; type=EST; length=664bp
ATATAAACATAAGTACATAAACACATTCATTTCTATAATTTCTCGATCTC
TTTAGGCTATTATTAGATTGAGAAATTGGAAATGGAGACCTTACCGATGA
CGACGGCGAAATCATCGGAGAGGAGAGGGAGATCGAAGCAAATTCACACA
TCGAAACCCTCAGTTGTCTTGGCTTTCTTCTCTTGCCTCGCTTGGCTTTA
CGTTGCCGGAAGGCTGTGGCAAGATGCTGAGAACAGAACATTACTTTCTA
ATTTTCTTAAGAAAAGCATGGAGCAGAGACCCAAGGTTCTTACAGTTGAA
GATAAGCTGATGCTTCTAGGATGCAAAGATCTGGAGAGAAGGATTGTGGA
AGCTGAGATGGACTTGACATTAGCCAAGAGTCAAGGGTACCTGAAGAATC
AGTTGCTGCAAAGTGGGTCTTCTTCGGGGAAAAAGCTTCTTGCTGTTATT
GGAGTTTACACAGGGTTTGGTAGTCACTTGAATAGAAATGTATATCGAGG
ATCTTGGATGCCCAAAGGTGATGCCTTAAAAAACTCGAGGAAAGAGGAGT
GGTCATCCGTTTTGTGATTGGTCGGAGTGCCAATCGAGGCGATAGCTTAG
ATCGCAAAATCGATGCAGAANATCGTGAGACGAAGGATTTCCCTGATTCT
TGAGGTCATGAGGA
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